GgaALTA0001171-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr23:4691264-4692098:-
Coord C1 exon
chr23:4692031-4692098
Coord A exon
chr23:4691435-4691727
Coord C2 exon
chr23:4691264-4691434
Length
293 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTTTTTTCCAAATGAAACAGGGA
3' ss Score
5.85
Exon sequences
Seq C1 exon
TTCATAATCAAGTAGAAGAAACATTACGGACGCAGTTAGCGCCACAAACTCCAGAAACTAACTTCAGG
Seq A exon
GGAACAGCTCTATCAACAGGAGACACTGCCCAACCAACCAAGTGCCCTTACTGACAACCATCTTAGAGAGCTGGGTGACTTCTGCTTTGTCCAGAGGAGTGAAAAGGATTGGGGGTGGGATAACAGAGGGTGCTGCAGGGAGGTAGAGGCAGCAGCTGCTGCCCTTCGTTTCTCCCACCGTCCAGTGGCAGGACCCATTTCTCTTGGTCTACAACAGAAACTCCCCTTGGCATCAGCCCAACTCCTCTTGGCAGATGCAGGAGGGTGAATTCTTTTTCATATTATTGTTTCAG
Seq C2 exon
GAGTCTAGCTACCTATTTTCTAGTAAGGAATCTATTGGACAAGAGCTGGGGAATTCCTTTGCACCAAATATTAGAATTAAGGAGGAGCCTTTGGATGACGAATATGATAAAGCTATGGCCCCACAGCAGGGACTATTAGACAAAATTAAAGATGAACCTGATAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAAGTAGAAGAAACATTACGGAC
R:
TTAATTTTGTCTAATAGTCCCTGCTG
Band lengths:
212-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]