GgaEX0003139 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4688338-4692098:-
Coord C1 exon
chr23:4692031-4692098
Coord A exon
chr23:4691264-4691434
Coord C2 exon
chr23:4688338-4688416
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTTCATATTATTGTTTCAGGAG
3' ss Score
9.05
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTCATAATCAAGTAGAAGAAACATTACGGACGCAGTTAGCGCCACAAACTCCAGAAACTAACTTCAGG
Seq A exon
GAGTCTAGCTACCTATTTTCTAGTAAGGAATCTATTGGACAAGAGCTGGGGAATTCCTTTGCACCAAATATTAGAATTAAGGAGGAGCCTTTGGATGACGAATATGATAAAGCTATGGCCCCACAGCAGGGACTATTAGACAAAATTAAAGATGAACCTGATAATTCTGAG
Seq C2 exon
GAGTACGGCCAACAGCCAAAAACTCAGGAAGGGGAGCTGAAAATCAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.807 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAGAAGAAACATTACGGACGCA
R:
CAAGAGGACTGCCACTGACTG
Band lengths:
138-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]