RnoEX0102054 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144932448-144940405:-
Coord C1 exon
chr5:144940344-144940405
Coord A exon
chr5:144939820-144939990
Coord C2 exon
chr5:144932448-144932532
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATATTGTGTTTTAGGAC
3' ss Score
12.59
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
CTAATCAAGTTGAAGAAACATTACATACTCATTTACCACAAAACCCAGAAACAAACTTTAGG
Seq A exon
GACTCCAGCTACCCATTTGCCAATAAAGAATCCATTGGTTCGGAACTGGGGAATTCGTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAAAGCAGTGGCGCCTCAGCAGGGACTACTAGACAGAGTTAAAGACGAACCTGACAATGCTCAA
Seq C2 exon
GAGTATGGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX1-6/8=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.667 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACTCATTTACCACAAAACCCA
R:
AGAGGACTGCCACTGACTGAA
Band lengths:
123-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]