MmuEX0053946 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126915581-126948479:-
Coord C1 exon
chr4:126948434-126948479
Coord A exon
chr4:126923064-126923234
Coord C2 exon
chr4:126915581-126915665
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATATTGTGTTTTAGGAC
3' ss Score
12.59
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
Seq A exon
GACTCCAGCTACCCATTTGCCAGTAAAGAATCCATTGGTTCGGAACTGGGGAATTCGTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAGAGCAGTGGCGCCTCAGCAGGGACTACTAGACAGAGTTAAAGACGAACCTGACAATGCTCAA
Seq C2 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446_MULTIEX2-4/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.640 C2=0.579
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACAGAAAAGTGATGCAGT
R:
AAGAGGACTGCCACTGACTGA
Band lengths:
130-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types