MmuEX0053946 @ mm9
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126592825-126600874:-
Coord C1 exon
chr4:126600813-126600874
Coord A exon
chr4:126600308-126600478
Coord C2 exon
chr4:126592825-126592909
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATATTGTGTTTTAGGAC
3' ss Score
12.59
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
CTAATCAAGTTGAAGAAACATTACATACTCATTTACCACAAAACCCAGAAACAAACTTTAGG
Seq A exon
GACTCCAGCTACCCATTTGCCAGTAAAGAATCCATTGGTTCGGAACTGGGGAATTCGTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAGAGCAGTGGCGCCTCAGCAGGGACTACTAGACAGAGTTAAAGACGAACCTGACAATGCTCAA
Seq C2 exon
GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.635 C2=0.575
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACTCATTTACCACAAAACCCA
R:
AGAGGACTGCCACTGACTGAA
Band lengths:
123-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: