BtaEX0041019 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111192213-111205859:-
Coord C1 exon
chr3:111205683-111205859
Coord A exon
chr3:111193395-111193558
Coord C2 exon
chr3:111192213-111192285
Length
164 bp
Sequences
Splice sites
3' ss Seq
CAGTTCCTAATTTATTTTAGGAA
3' ss Score
7.85
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
AAAGAAGTTGGGAAGCCTCCTTAAGCGGTTGTGGCGTCGATCTTTATTCATGTGCTTTACCAGAGGCGAGCGGAGAGTTTCACCAGTCAGAGGGAAGATGAAGTGTCCGGGAGAGCCGGGGTTCTAGGAACCCAGCCTTGCCTGTGGATGCCGCCCTGTGGGGGTCGAGAATTCAGG
Seq A exon
GAAACTGTTTCCCAAGGAAAAAACCCATTAGTTTGGAATTAGAGGATTTCTTTGCATCAGATACTAAGATGAAAGAATCACCAACAAATGGTGACTGTGACAAGGCAGCGGTGACACAAGTTAAGAGGCCAGAGGAAATTAAGGTGGAACCCGACAATACTCAG
Seq C2 exon
GAGTACTGTCAAGCCCAACAGCCCAAAACTCAGGAGAATGACCTGAAAATAAACTCTGCATTTTCAGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555_MULTIEX1-1/6=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.680
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGAAGCCTCCTTAAGCG
R:
CACTGTCTGAAAATGCAGAGTT
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development