BtaEX0041020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006555 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr3:111191757-111205859:-
Coord C1 exon
chr3:111205683-111205859
Coord A exon
chr3:111192213-111192285
Coord C2 exon
chr3:111191757-111192006
Length
73 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTTTTTTTTTTTAGGAG
3' ss Score
10.45
5' ss Seq
GTGGTAATA
5' ss Score
3.78
Exon sequences
Seq C1 exon
AAAGAAGTTGGGAAGCCTCCTTAAGCGGTTGTGGCGTCGATCTTTATTCATGTGCTTTACCAGAGGCGAGCGGAGAGTTTCACCAGTCAGAGGGAAGATGAAGTGTCCGGGAGAGCCGGGGTTCTAGGAACCCAGCCTTGCCTGTGGATGCCGCCCTGTGGGGGTCGAGAATTCAGG
Seq A exon
GAGTACTGTCAAGCCCAACAGCCCAAAACTCAGGAGAATGACCTGAAAATAAACTCTGCATTTTCAGACAGTG
Seq C2 exon
CTCCTCAGATCACTACAGGCATTCAGCTTTCTCTGGCATCATCTGGCATGAATAAGATGCTTCCTTCAATTTCAACCACAGCTGTTCAGGTTTCCTGTTCTGGTTGTAAAAAAGTTTTTCAAAAGGGACAAACTGCTTATCAGAGGAAAGGTTCTACTGAGCTTTTCTGCTCCACACCATGCATCACTGAATACATTTCATCTGGCAGTTCACCAGCTCTTCCGAAGAGAACTTGTTCAAACTGCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006555_MULTIEX1-2/6=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.680 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTGCTTTACCAGAGGCG
R:
GCCAGAGAAAGCTGAATGCCT
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development