HsaEX0072875 @ hg19
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253]
Coordinates
chr1:35559515-35563167:+
Coord C1 exon
chr1:35559515-35559684
Coord A exon
chr1:35561420-35561492
Coord C2 exon
chr1:35562918-35563167
Length
73 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTCTTTTTAGGAG
3' ss Score
11.37
5' ss Seq
GTGGTAATA
5' ss Score
3.78
Exon sequences
Seq C1 exon
GAATCTGGAAACTGTTCTTCAGGAAGAAACCCATTAGTTTGGAACTGGAGAATTCCTTTGCATCAGATACTAAAATGAAAGAACCACTTTTAGGTGGTGAGTGTGACAAGGCAGTGGCATCACAGCTGGGGCTGCTAGATGAAATTAAGACAGAACCCGACAATGCTCAA
Seq A exon
GAGTATTGTCATAGGCAACAGTCCAGAACTCAGGAGAATGAACTGAAAATAAATGCTGTGTTTTCAGAGAGTG
Seq C2 exon
CTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCATCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAAAAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATGCATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056-'7-11,'7-10,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.280 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF110233=DUF2614=PU(1.5=4.0)
C2:
PF110233=DUF2614=PD(96.9=75.0),PF064679=zf-FCS=WD(100=48.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGGCTGCTAGATGAAAT
R:
CAGTTTGCCCCTTCTGGAGAA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)