HsaEX0072875 @ hg38
Exon Skipping
Gene
ENSG00000197056 | ZMYM1
Description
zinc finger MYM-type containing 1 [Source:HGNC Symbol;Acc:HGNC:26253]
Coordinates
chr1:35093914-35097566:+
Coord C1 exon
chr1:35093914-35094083
Coord A exon
chr1:35095819-35095891
Coord C2 exon
chr1:35097317-35097566
Length
73 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTCTTTTTAGGAG
3' ss Score
11.37
5' ss Seq
GTGGTAATA
5' ss Score
3.78
Exon sequences
Seq C1 exon
GAATCTGGAAACTGTTCTTCAGGAAGAAACCCATTAGTTTGGAACTGGAGAATTCCTTTGCATCAGATACTAAAATGAAAGAACCACTTTTAGGTGGTGAGTGTGACAAGGCAGTGGCATCACAGCTGGGGCTGCTAGATGAAATTAAGACAGAACCCGACAATGCTCAA
Seq A exon
GAGTATTGTCATAGGCAACAGTCCAGAACTCAGGAGAATGAACTGAAAATAAATGCTGTGTTTTCAGAGAGTG
Seq C2 exon
CTTCACAGTTGACTGCAGGCATTCAGCTTTCTCTGGCATCATCTGGCGTGAATAAAATGCTTCCTTCAGTTTCAACCACAGCTATTCAGGTTTCCTGTGCTGGTTGTAAAAAAATTCTCCAGAAGGGGCAAACTGCTTATCAGAGGAAAGGATCTGCTCAACTTTTCTGCTCCATACCATGCATCACTGAATACATTTCATCTGCCAGTTCACCAGTTCCTTCTAAGAGAACTTGTTCAAACTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197056_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(28.9=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGGCTGCTAGATGAAAT
R:
CAGTTTGCCCCTTCTGGAGAA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development