GgaALTA0001269-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7162595-7163645:-
Coord C1 exon
chr17:7163410-7163645
Coord A exon
chr17:7162884-7162887
Coord C2 exon
chr17:7162595-7162883
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATGCTTGCCAATCTCCCCAGGCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
CTAAAGGCAGTCCATGAGCAGCTAGCTGCGTTATCACAAGCACCAGTGAACAAACCAAAGAAAAAAAAAGAGAAGAAGGAAAAAGAGAAGAAAAAGAAAGACAAAGAGAAGGAAAAGGAAAAGCACAAAGTAAAAGCTGAGGAGGAGAAGAAGCCTAAGGTGGCTCAACCACCGAAGCAAACCCAGCAGAAGAAAGCCCCAGCTAAAAAGGCAAACAGCACGACCACAGCTAGCAG
Seq A exon
GCAG
Seq C2 exon
CCCAAGAAAGGAGGAAAACAGGCATCTGCAACCTATGATTCGGATGAGGAGGAGGAAGGCCTGCCCATGACCTATGATGAGAAACGGCAGCTCAGCTTGGACATCAACCGCTTGCCTGGGGAGAAGCTGGGCCGAGTGGTGCACATCATCCAGTCACGGGAACCTTCCCTCAGGGACTCCAATCCTGATGAGATAGAAATAGATTTTGAAACCTTGAAGCCCACAACGTTGCGAGAACTGGAGAGATACGTGAAATCTTGTTTACAGAAAAAGCAAAGGAAACCATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-20-18,20-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.949
Domain overlap (PFAM):
C1:
PF087385=Gon7=PD(47.2=53.2)
A:
NA
C2:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGCACGACCACAGCTAG
R:
CATCATAGGTCATGGGCAGGC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]