RnoALTA0006087-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:5999841-6002772:-
Coord C1 exon
chr3:6002537-6002772
Coord A exon
chr3:6000130-6000133
Coord C2 exon
chr3:5999841-6000129
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGGCTCGTCTTCTGCCTCAGACA
3' ss Score
6.91
Exon sequences
Seq C1 exon
CTGAAAGCCGTGCACGAACAGCTGGCCGCCTTGTCTCAGGCCCCAGTGAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAAAAGGAGAAGAAGAAGAAAGACAAGGAGAAGGAGAAGGAGAAGCACAAGGCCAAGTCCGAGGAGGAGAAGAAGGCCAAGGCAGCCCCAGCAGCCAAGCAGGCCCAGCAGAAGAAGGCTCCCACCAAGAAGGCCAATAGCACAACCACAGCCAGCAG
Seq A exon
ACAG
Seq C2 exon
CTCAAGAAGGGCGGCAAGCAGGCATCTGCATCCTATGACTCGGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAGAAGCGGCAACTCAGCCTCGACATCAACCGGCTGCCTGGCGAGAAGCTAGGTCGTGTGGTGCACATCATTCAGTCCCGGGAGCCTTCCCTTCGGGACTCGAACCCAGACGAGATTGAGATTGACTTTGAGACCCTGAAGCCAACCACACTTCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAGAGGAAACCATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-35-20,35-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATAGCACAACCACAGCCA
R:
TCTCATCGTAGCTCATGGGCA
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]