GgaALTA0001293-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2480925-2481284:+
Coord C1 exon
chr12:2480925-2481043
Coord A exon
NA
Coord C2 exon
chr12:2481134-2481284
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GCTCTCCTCCATACAAGCAGAGA
3' ss Score
2.68
Exon sequences
Seq C1 exon
GTACCCCGAGAAGGGTCTGGATGACAACTATTGCCGCAACCCGGACAGCTCTGAGCGGCCCTGGTGCTACACCACTGACCCGGCGCTGGAACGCGAGTTCTGTCGCATCCGTGTCTGCA
Seq A exon
NA
Seq C2 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-7-10,7-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=76.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACACCACTGACCCG
R:
AGCCGGTGGTGACGTTGAT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]