GgaALTA0001293-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2480925-2481284:+
Coord C1 exon
chr12:2480925-2481043
Coord A exon
chr12:2481131-2481133
Coord C2 exon
chr12:2481134-2481284
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GCCGCTCTCCTCCATACAAGCAG
3' ss Score
2.2
Exon sequences
Seq C1 exon
GTACCCCGAGAAGGGTCTGGATGACAACTATTGCCGCAACCCGGACAGCTCTGAGCGGCCCTGGTGCTACACCACTGACCCGGCGCTGGAACGCGAGTTCTGTCGCATCCGTGTCTGCA
Seq A exon
CAG
Seq C2 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACACCACTGACCCG
R:
AGCCGGTGGTGACGTTGAT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]