GgaALTA0001293-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2307814-2308173:+
Coord C1 exon
chr12:2307814-2307932
Coord A exon
chr12:2308020-2308022
Coord C2 exon
chr12:2308023-2308173
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GCCGCTCTCCTCCATACAAGCAG
3' ss Score
2.2
Exon sequences
Seq C1 exon
GTACCCCGAGAAGGGTCTGGATGACAACTATTGCCGCAACCCGGACAGCTCTGAGCGGCCCTGGTGCTACACCACTGACCCGGCGCTGGAACGCGAGTTCTGTCGCATCCGTGTCTGCA
Seq A exon
CAG
Seq C2 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-6-7,6-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(73.7=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTACACCACTGACCCG
R:
AGCCGGTGGTGACGTTGAT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]