MmuALTA0011343-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:107984534-107984991:+
Coord C1 exon
chr9:107984534-107984652
Coord A exon
NA
Coord C2 exon
chr9:107984823-107984991
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGC
5' ss Score
7.2
3' ss Seq
CCTGCCTCCGACCGTCAAAGGAT
3' ss Score
4.88
Exon sequences
Seq C1 exon
GTTCCTAGACAAAGATCTGAAAGACAACTATTGTCGTAATCCGGACGGATCTGAGCGGCCCTGGTGCTACACCACAGACCCGAATGTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCG
Seq A exon
NA
Seq C2 exon
GATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-7-8,7-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(50.0=95.1)
A:
NA
C2:
PF0005113=Kringle=PU(53.2=73.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACACCACAGACCCGAATG
R:
TCTTCACCTTTTCCGCGGAAG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: