GgaALTA0001319-2/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000025759 | TFDP2
Description
transcription factor Dp-2 [Source:RefSeq peptide;Acc:NP_001171642]
Coordinates
chr9:9838666-9839460:-
Coord C1 exon
chr9:9839298-9839460
Coord A exon
chr9:9838732-9838809
Coord C2 exon
chr9:9838666-9838731
Length
78 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
CTGCATTGTTCTCTTAGCAGGCT
3' ss Score
6.26
Exon sequences
Seq C1 exon
TAAAAGAAGCAAAAAAGGAGACAAAAATGGGAAAGGTCTGAGGCATTTCTCCATGAAAGTATGTGAAAAAGTTCAACGTAAAGGAACAACTTCATACAATGAAGTTGCTGATGAGCTGGTATCAGAATTCACAAATTCCAACAGCCACCTAGCTGCGGATTCG
Seq A exon
GCTTATGATCAGAAAAATATTAGACGGAGAGTGTATGATGCCCTTAATGTGTTGATGGCAATGAACATAATTTCAAAG
Seq C2 exon
GAGAAGAAGGAAATCAGATGGATCGGCCTTCCCACAAACTCAGCTCAGGAATGTCAGAATCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025759-21-22,21-21,21-20,21-19-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(4.1=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAAGGTCTGAGGCATTT
R:
GAGTTTGTGGGAAGGCCGATC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]