DreALTA0029549-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000042835 | tfdp2
Description
transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
Coordinates
chr15:4444609-4454087:-
Coord C1 exon
chr15:4453925-4454087
Coord A exon
NA
Coord C2 exon
chr15:4444609-4444752
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGTGTTTGTGCTTGCAGCAGGTG
3' ss Score
6
Exon sequences
Seq C1 exon
TAAGAGATTGAAAAGGGCGGATAAGAATGGTAAAGGCCTGCGGCATTTCTCCATGAAGGTGTGCGAGAAGGTCCAGAAGAAAGGCACTACGTCGTACAACGAGGTGGCAGATGAGCTGGTAGCCGAGTTCACACACGCCAGCAGTCTGATGCCTGCAGACTCT
Seq A exon
NA
Seq C2 exon
GTGTACGACCAGAAAAACATTCGCCGGCGTGTGTATGACGCGCTCAACGTGCTGATGGCCATGAACATTATCTCCAAAGAGAAGAAGGAGATACGCTGGATCGGCCTTCCCACAAACTCAGCCCAGGAGTGCCGCAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042835-20-20,20-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
NA
C2:
PF0231915=E2F_TDP=PD(42.7=71.4),PF087815=DP=PU(4.4=12.2)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACAACGAGGTGGCAGATG
R:
CGGCGAATGTTTTTCTGGTCG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]