GgaALTA0001482-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003028 | ADAMTS13
Description
NA
Coordinates
chr17:7589987-7590657:+
Coord C1 exon
chr17:7589987-7590037
Coord A exon
chr17:7590189-7590344
Coord C2 exon
chr17:7590345-7590657
Length
156 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
TCGTTATTTCCATCTTACAGGTG
3' ss Score
10.7
Exon sequences
Seq C1 exon
TGTGTCATCCGAATGTGTTCTTATGAATGGAGCTTCAGTGAATGGACAGAG
Seq A exon
GTGATGAAACTAAAGAACTGAAAAGTCAGGTGGTAGAACAGCATCAGTGAACAAAAGATCAGAATTCTGGATCACGCTTGAGCAAGTCAGTGTTATTTATTTCTGAATACCAGCTGAAACGCATGCATAAAGACCTATGGATTTCTTCCTCTGCAG
Seq C2 exon
TGTTCAACTTCATGTGGGAATGGTGTTCAGACACGGCACAATTTCTGCCTCAACCGGCTCACTCATAAGCACGTGAACCCCATCTTCTGCAGGCGCTTCCCCAAAGCCATTGTGCTGCGTGGCTGCTCTGCAGGGCCCTGTCCTGAGCAGGGGGTGGACTCCAGGTTGCATGGAGCAGAACTGCAGACAGTGACACCAGCCATGCATCTGATGACTACTGCAGATGCTGAAGGGCCAAGATACAAAGGCCTGATTCTTCCTTCATCTGCTCTGCCAGCTGTCCTTCAGGAACAGATAAAGGAGACCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTTCAGTGAATGGACAGA
R:
GCCCTTCAGCATCTGCAGTAG
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]