GgaALTA0001482-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6921784-6922608:+
Coord C1 exon
chr17:6921784-6921988
Coord A exon
chr17:6922296-6922387
Coord C2 exon
chr17:6922388-6922608
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
ATGGATTTCTTCCTCTGCAGTGT
3' ss Score
7.48
Exon sequences
Seq C1 exon
ATGGAAGGTAACCCCGGGTGGCCCCTGTTCCTCCAGCTGTGGGCTTGGCTTATCTGTTCAGCTGGTCACCTGTGTGCAGATTCAGCAAGGCAAAGAGATTTTGCTGGAGCAGCATTCATGTCCTGTGTCAGAGAAGCCCCTTACTACCATTCCCTGTGTCATCCGAATGTGTTCTTATGAATGGAGCTTCAGTGAATGGACAGAG
Seq A exon
TGTTCAACTTCATGTGGGAATGGTGTTCAGACACGGCACAATTTCTGCCTCAACCGGCTCACTCATAAGCACGTGAACCCCATCTTCTGCAG
Seq C2 exon
GCGCTTCCCCAAGGCCATTGTGCTGCGTGGCTGCTCTGCAGGGCCCTGTCCTGAGCAGGGGGTGGACTCCAGGTTGCATGGAGCAGAACTGCAGACAGTGACACCAGCCATGCATCTGATGACTACTGCAGATGCTGAAGGGCCAAGATACAAAGGCCTGATTCTTCCTTCATCTGCTCTGCCAGCTGTCCTTCAGGAACAGATAAAAGAGACCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028-30-32,30-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(18.4=10.1)
A:
NA
C2:
PF0009014=TSP_1=PD(76.3=27.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTCCCTGTGTCATCCGA
R:
CATCAGATGCATGGCTGGTGT
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]