GgaALTA0001681-2/3 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr17:7450626-7451375:-
Coord C1 exon
chr17:7451174-7451375
Coord A exon
chr17:7450856-7450936
Coord C2 exon
chr17:7450626-7450855
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CTCTGGCCTCCCTCCCCCAGCAC
3' ss Score
8.91
Exon sequences
Seq C1 exon
CCGGCAGCCAGCCAGCACCGAGCCCTGTGCCAGCGGCAGTTCCCACTCCAAGTCCTTCGACCAGCTCAAGTGCGGGCAGTACCTGTGCAGTGGGGATGCCACTGACTCAGTCAGCGTCACCTCCGCCGGCTCCAGCAGCTCCGACGTGGAGGAGATCAACATCAGCTTCATCCCTGAGTCCCCCGACTGCCAGGAGAAGAAG
Seq A exon
CACTCGTACACCCCGTCTGTGGCTGATGGAGAAGCTAAACCCACTGTGTCCTCCGCATCCCCTCTCCTCCCTGCCCTCCAG
Seq C2 exon
TTCTGGGAATCCACCTCTCTCTCCTCCCTGGACACGTCGGGCATCGGCTCGGGCTCCAGCAGTGCCTCATCCTCCTCCGTCTCCTCCACGCCGGTGACAGCATCCCGCACTCACAAGCGTTCCGTCTCCGGCATCTCCAGCTACTCGTCCCTCTCGCTGCCCCTTTACAACCAGCAGGTCGATGACTGCTGTATCATCCGCGTCAGCCTGGCTGTGGACAACGGCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-16-16,16-15,16-14-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=24.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCGACCAGCTCAAGTG
R:
AGGGAGGAGAGAGAGGTGGAT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]