GgaALTA0001681-1/3 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr17:7450626-7451375:-
Coord C1 exon
chr17:7451174-7451375
Coord A exon
NA
Coord C2 exon
chr17:7450626-7450855
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CTCTCCTCCCTGCCCTCCAGTTC
3' ss Score
9.5
Exon sequences
Seq C1 exon
CCGGCAGCCAGCCAGCACCGAGCCCTGTGCCAGCGGCAGTTCCCACTCCAAGTCCTTCGACCAGCTCAAGTGCGGGCAGTACCTGTGCAGTGGGGATGCCACTGACTCAGTCAGCGTCACCTCCGCCGGCTCCAGCAGCTCCGACGTGGAGGAGATCAACATCAGCTTCATCCCTGAGTCCCCCGACTGCCAGGAGAAGAAG
Seq A exon
NA
Seq C2 exon
TTCTGGGAATCCACCTCTCTCTCCTCCCTGGACACGTCGGGCATCGGCTCGGGCTCCAGCAGTGCCTCATCCTCCTCCGTCTCCTCCACGCCGGTGACAGCATCCCGCACTCACAAGCGTTCCGTCTCCGGCATCTCCAGCTACTCGTCCCTCTCGCTGCCCCTTTACAACCAGCAGGTCGATGACTGCTGTATCATCCGCGTCAGCCTGGCTGTGGACAACGGCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-16-16,16-15,16-14-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=24.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCGACCAGCTCAAGTG
R:
AGGGAGGAGAGAGAGGTGGAT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]