BtaALTA0024411-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103129867-103130452:-
Coord C1 exon
chr11:103130251-103130452
Coord A exon
chr11:103129936-103130109
Coord C2 exon
chr11:103129867-103129935
Length
174 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
GACCATGCCGTTGCCCACAGTTC
3' ss Score
7.86
Exon sequences
Seq C1 exon
CCGCCAGGCCCCCAGCACAGAGCTCAGTACCAGCGGCAGCTGCCACTCCAAGTCCTGTGACCAACTCAGGTACGGCCCCTACCTCAGCAGCGGAGACATTGCTGACGCACTCAGCGTCCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCCCCCGACGGCCAGGAGAAGAAG
Seq A exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCCGGCATCAGCTCGGCCTCCAGCAGCACGTCCTCCTCCTCGGCCTCCACCACGCCCGTGGCCAGCACGCGCACCCACAAGCGCTCCGTGTCCGGGGTCTGCAGCTACGGCTCCTCACTGCCCCTCTACAACCAGCAG
Seq C2 exon
GTGGGCGACTCCTGCATCATCCGGGTGAGCCTGGACGTGGACAACGGCAACATGTACAAGAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-14-26,14-25,14-24-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=24.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCTCAGTACCAGC
R:
TGCTCTTGTACATGTTGCCGT
Band lengths:
252-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development