RnoALTA0032925-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7126098-7126651:+
Coord C1 exon
chr3:7126098-7126299
Coord A exon
chr3:7126409-7126582
Coord C2 exon
chr3:7126583-7126651
Length
174 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
GACACTGCTGTCGCCCACAGTTC
3' ss Score
9.08
Exon sequences
Seq C1 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCACACTCCAAGTCATGTGACCAGCTCCGGTGCAGCCCCTACCTCAGCAGCGGGGACATCACGGACGCACTCAGTGTGCACTCAGCTGGTTCATCCAGCTCTGACGTGGAGGAGATCAACATGAGCTTTGTTCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
Seq A exon
TTCTGGGAGTCAGCCTCCCAGTCGTCCCCAGAGACCTCTGGCATCAGCTCGGCCTCCAGCAGCACCTCCTCTTCGTCAGCCTCTACCACACCGGTGTCTACCACACGCACCCACAAGCGCTCTGTCTCAGGGGTCTGCAGCTACAGCTCCTCACTGCCACTCTACAACCAGCAG
Seq C2 exon
GTGGGCGACTGCTGCATCATCAGGGTCAGCCTGGATGTGGACAACGGCAACATGTACAAGAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-25-32,25-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078818=RA=PU(22.7=24.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCACCAGTAGCAGTGC
R:
TGCTCTTGTACATGTTGCCGT
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]