GgaALTA0001874-5/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6206135-6207093:+
Coord C1 exon
chr17:6206135-6206217
Coord A exon
chr17:6206902-6207015
Coord C2 exon
chr17:6207016-6207093
Length
114 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCATTTCGTGCTTTGCATAGCAG
3' ss Score
3.93
Exon sequences
Seq C1 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
Seq A exon
CAGGGTTTTAAAGGCAGCCAGGGGGATAGTGGCATTGACTTGAGTGCGGAGTCTCGGGAATCCTCCGCGACCTCCTCTCAGCGCAGTTCTCCATATGGCACCCTCAAACCAGAG
Seq C2 exon
GAGATGAATGGGGCTGGCCTGGTGGACCCAAAGCCTGACTGCCAGAAGGAGCAAGTGCAGAAGCAATCTGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-31-34,31-33,31-32,31-31,31-30-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCAGTTCAGTCTCCTGGA
R:
GCTTCTGCACTTGCTCCTTCT
Band lengths:
147-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]