GgaINT1022709 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6206135-6207093:+
Coord C1 exon
chr17:6206135-6206217
Coord A exon
chr17:6206218-6206901
Coord C2 exon
chr17:6206902-6207093
Length
684 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GCATTTCGTGCTTTGCATAGCAG
3' ss Score
3.93
Exon sequences
Seq C1 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
Seq A exon
GTAAGTGGCAACTCATGCCATTCAGGTATTCTGTGTGTAAAATTTTAACATAGATGGCTTATGCTTCTCATTGCTCCATCTGTGCTTAGTGACTGTCAGCTCTGCTTGTGCAATTCTAAACTCTGTGCAATTCTGATTTGAGCTTCATGCTGCTCTAACCTAGAGGGCCAAGTGTTGCTTAGAGTTAGATGTGGGTGTAAGTCTGCAGTAACTGTCTGGTAGGTGTATTTCAGGGTTGTGCTTCTAACTGGAAGCAATCTCTGTTGTCCAGGAGGTGAAATACTGTAGATAATGTTTTTTTATGCCTCATTCCTGTGAGCAGTGTGTAGCTGTAGCCTTAATGCAGAGATGGCAGAGGAAGTTTGAGAATGTTTCACCTGTGGAGGCCAGAGTTCAAGACTGGTTTGGTTCACAAGAAACATAAGTTTGGCAGTCTTTGCCTACTTGCCGTGTGTGCTACTTCCACCTTATTCTGGAGCCACAGTGGGGTTAGCCTGTCTCAGGGTTGTGTAGCAGTAAAGCAGTAGCCAAGGGAATGCTGCAGGTCAAGACCAACTCCTCTGTAGTTAACCAAGAGTGTGATTTCAAAAGGGGACATGGTCTTGCTGTTTTCTGGGATATTTTTCCTCCTTTGTGGATTTGGGTCAAAGTCCGGGGCTTTAACGCATTTCGTGCTTTGCATAG
Seq C2 exon
CAGGGTTTTAAAGGCAGCCAGGGGGATAGTGGCATTGACTTGAGTGCGGAGTCTCGGGAATCCTCCGCGACCTCCTCTCAGCGCAGTTCTCCATATGGCACCCTCAAACCAGAGGAGATGAATGGGGCTGGCCTGGTGGACCCAAAGCCTGACTGCCAGAAGGAGCAAGTGCAGAAGCAATCTGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCAGTTCAGTCTCCTGGA
R:
TGCTTCTGCACTTGCTCCTTC
Band lengths:
262-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]