HsaINT0016678 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:134357113-134357949:+
Coord C1 exon
chr9:134357113-134357195
Coord A exon
chr9:134357196-134357757
Coord C2 exon
chr9:134357758-134357949
Length
562 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCATTTTGTGCTCTGCACAGCAG
3' ss Score
6.12
Exon sequences
Seq C1 exon
CTCTCCCTGTGCAGGCCCCAGCCAACGACTCCTGGAGGAAAGCTGTCACTGCCTTCAGCAGCACCGAGACTGGCTCTGCGGAG
Seq A exon
GTGAGTGTGGCCGCTGCCCACATGCTGCCCCTGGGATGAGTGTGTGAGTGTGTGCTCACCATCCACACGGCCAGCTTGCTGTGGCCCACCCAAGCCCCTGCCACAGCAGCTGAGCTTGGAATTAGGTTGTTTCCATGGGGCCAAGCTCATCAGTGGTTTTCCATCTTGATTTCTGGCCTGTGCATGGGGCGTGCATGAGCAGGAGAAAGAGAAAAGGGGTAACAAGGGAGGACCCAACGCTGGGTGGGAAGAGGGATTCAGGGCCTCCTCTGAACTGGTGTCAGCAGCCACGTAGTCTGGTTTGGGTCACAAGTGAGATGGGTTTGGCAGCCTCGGTCTGGGGCCCATAGAAGATCCTGTGGTCACGAGCTCTATCGGGGTTGGTGTGTTTGGCCACACGTAAGTTGTCAGGCATCCTCAGCAGGGCAGGATCAAGATCAGGACCAGACTTGGCAAGGGACAGGCAGCTGGGGTAGAAAAGTCTCTGTGCCACATGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAG
Seq C2 exon
CAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCCGAGTCTCGGGAGTCGTCTGCGACCTCCTCGCAGCGCAGCTCCCCATATGGGACTCTGAAGCCAGAGGAGATGAGCGGGCCCGGCCTGGCGGAACCCAAGGCCGACAGCCACAAGGAGCAGGCTCCAAAGCCATCTGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-BAT2L1:NM_013318:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGACTCCTGGAGGAAAG
R:
CTTCTGCTCAGATGGCTTTGGA
Band lengths:
254-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)