BtaINT0118608 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101632011-101632589:+
Coord C1 exon
chr11:101632011-101632093
Coord A exon
chr11:101632094-101632400
Coord C2 exon
chr11:101632401-101632589
Length
307 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGGCCATGTGTCCTGCACAGCAG
3' ss Score
5.98
Exon sequences
Seq C1 exon
CCCTCCCCCTTCAGGCCTCGACCAGTGACTCCTGGACCAAAGCTGCCACTGCCTTCACCAGCGCTGAGCCTGGCTCTGCTGAG
Seq A exon
GTGAGTGGCCCCCAGGCACCAAGCGTGTGCTCACAGTCCAGGGCCGTCACAGCCTCCCGCCCAGGCTCTCCCTGGCCAGGCAGTGAGCCTGGCCCATTGCTGGTCTCCAGTCTTGCTTTCAGGTGTGTGGGAGGGAGAAAGAGGGGATGGCAAGGGAGTACCCACCCTGGGTCCTCGGCGTCTGGCCATGCTTACAGTGCAGGGGCCCACATGTACCGGAGATCACGGGCTTGGGCCAGGAGACACGTCATGCCCCAGGTCTCACTCTGCGGGACTCAGGTGCTGACTGGCCATGTGTCCTGCACAG
Seq C2 exon
CAGGGCTTTAAGAGCAGCCAGGGAGACAGCGGTGTTGACCTGAGCGCCGAGTCCCGAGAGTCCTCAGCGACCTCCTCGCAGCGCAGCTCTCCATATGGCACCCTGAAGCCCGAGGAGGCAAGCGGGCCCGGCCTGGAGCCCAAGGCCGATGGCCACAAGGAGCAGACTCAAAAGCAGTCAGAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCCTTCAGGCCTC
R:
TTTGGCTCTGACTGCTTTTGAGT
Band lengths:
270-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development