MmuINT0023974 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:32074197-32074925:+
Coord C1 exon
chr2:32074197-32074279
Coord A exon
chr2:32074280-32074733
Coord C2 exon
chr2:32074734-32074925
Length
454 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCATTTTGTGTTCTGCACAGCAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
CCCTCCCTGTGCAGGGCGCCGCCAGTGACTCATGGAGGACAGCTGTCACTGCCTTCAGCAGTACTGAGCCTGGCACCTCAGAG
Seq A exon
GTGAGTGCCACTACCCAACACCCTTCCTGGCAGCTGGGCTTGCACAGGGTGCCCTACTGTGGTCCCTAGCTTATCACCCTCTTTAGCTTTGGCCTCTGCTTTCTGTGTGGTGCCTGTAGGAGCAGAGAGACAAGGGAGACTCTTAGCTGGGGAGCTGGCGTAAGAGTCACCTTTGAGCTGCTATTGCCTGGCACCTGTGTGCTCTGAATAAAATGAGTTTGGTGGCCTTCTTAGATCCATGCAGTGTCTAGTGGTCATGAGCTTACATAGAATTGGCGCATTCATTACACTTGGTGTGTGCCATGGGCCACTATCACGAGGGCAGGTCTGGACTTTGGAGTGGAGGTCAGTGGTGGGGAGGAAAGCTGGCCTGTGCTGTCCAGAGGCTGCCTCCTGGATGCTAGTGCTTTGCAGTTTGGGGTCAGGGATCTAACCCATTTTGTGTTCTGCACAG
Seq C2 exon
CAGGGGTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCTGAGTCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCATATGGCACTCTCAAGCCTGAGGAAATTAGCGGGCCTGGCCTGGCGGAATCTAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCAGGCGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2l:NM_172661:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGACTCATGGAGGACA
R:
CTTGTGCTCCGCCTGCTTC
Band lengths:
255-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: