DreINT0017305 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71247115-71247883:-
Coord C1 exon
chr5:71247807-71247883
Coord A exon
chr5:71247397-71247806
Coord C2 exon
chr5:71247115-71247396
Length
410 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CCCTCTGCTCTGTCCTGCAGGAT
3' ss Score
13.06
Exon sequences
Seq C1 exon
CTCTGACTGTGCAGTCGTCAGGAGGCGATTCCTGGACTAAACAGGTTTCCTACACGGGGAGCGAACCCAACTCAGAG
Seq A exon
GTACAGCACCAGAACTCTTGTGAAAATGCTGTCATCATTAAGCCTCCATTTACCCATTCCAAACCTGTTTATGTTTCTTTCTTCTGTTGAACGCTAAGGAAGATATTTTGAAGAATGTTGGAAACCTGTAACCATTGGCTCCCATTGTATTTTTGTTCCTACTTTGGAAGTCAGTGGTTTCAGGTTTTCATCTTGCTTTAAAATAATCCTCATGTGTGTTAGACAGAAGAAAGAAACTTATAAAGGTTTGGAGCCACTTGAAGGAGAGTAAATATGAGTAATGTTCTGCTGAACGGTCTCTTTAATCAAGAAGAGGTGTATTTAAATGTAAAGGAAGCAGAGTGTGTTAAGCAAATGTTCATTTTTTAGTGTGAACGACCCCTTCACCATCCCTCTGCTCTGTCCTGCAG
Seq C2 exon
GATTCAGATGCGGGACCGGAGCAGAGTAAAGAGCACAAGCCTGGTCCGATCGGGAATGAGCGCTCGCTGAAGAACCGGAAAGGCTCAGAGGGTCTGGAGCGCCTGGAGGGATCCATCACTCCCGTTAACGGCGTGGATATTCACGTGGAAAACGTCATTCCTGTGCCGCCCATCGAGTTCGGCGTCAATGCGAAAGATTCAGACTTCAGCCTTCCTGCAGGATCTGCAGCCGTGCCCGTCTCCAACCCCGTCTCCAAACTGCAGGACGCCCTCGCCGGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGCAGTCGTCAGGAG
R:
GCGTCCTGCAGTTTGGAGAC
Band lengths:
342-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]