GgaINT0123929 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6833845-6834370:+
Coord C1 exon
chr17:6833845-6834036
Coord A exon
chr17:6834037-6834175
Coord C2 exon
chr17:6834176-6834370
Length
139 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
CTCTCTGCTTTCCTGTTAAGGAT
3' ss Score
10.23
Exon sequences
Seq C1 exon
CAGGGTTTTAAAGGCAGCCAGGGGGATAGTGGCATTGACTTGAGTGCGGAGTCTCGGGAATCCTCCGCGACCTCCTCTCAGCGCAGTTCTCCATATGGCACCCTCAAACCAGAGGAGATGAATGGGGCTGGCCTGGTGGACCCAAAGCCTGACTGCCAGAAGGAGCAAGTGCAGAAGCAATCTGATAAAAAG
Seq A exon
GTAATCTGGATTTGCAGCCAAGCCAGAGCGCATAGTGAGAGAACTTGTGAAGTGGTTCTTTTGTTCTTAATAGCACTTTTAAGGCTTGAGATGGGGTTATTTGGTCTTTTTGTCTCAGCCTCTCTGCTTTCCTGTTAAG
Seq C2 exon
GATTCAGATCAAGGCTCAGGACAGAACAAGGAACACAAGCCTGGACCAATCGGCAACGAACGCTCCCTGAAAAACAGAAAGGGTTCGGAGGGAACGGAACGGCTGGAAGGGAATATTCCCCCTGTTAATGGGGTGGAAATTCACGTGGATTCTGTACTTCCTGTGCCACCCATTGAATTTGGAGTAAATCCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTCTCCATATGGCACCC
R:
CCACGTGAATTTCCACCCCAT
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]