HsaINT0016680 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131482371-131482907:+
Coord C1 exon
chr9:131482371-131482562
Coord A exon
chr9:131482563-131482709
Coord C2 exon
chr9:131482710-131482907
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CTCTCTGCTTTTTTATCAAGGAT
3' ss Score
7.94
Exon sequences
Seq C1 exon
CAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCCGAGTCTCGGGAGTCGTCTGCGACCTCCTCGCAGCGCAGCTCCCCATATGGGACTCTGAAGCCAGAGGAGATGAGCGGGCCCGGCCTGGCGGAACCCAAGGCCGACAGCCACAAGGAGCAGGCTCCAAAGCCATCTGAGCAGAAG
Seq A exon
GTAACCTGGACGTTCCAGTCACAGTGGCCAGGGCCTGGGTGGAAGGGGCCATCGTCTCATCATCTTCCTCAATTCCTGGGACAGTAGAAGCTAGAGAGTGTGGTCATTCCAGTCTGTGTGTCTCCACCTCTCTGCTTTTTTATCAAG
Seq C2 exon
GATTCAGAACAAGGCTCTGGACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGTTCTCTGAAAAACAGAAAGGGCTCGGAGGGGGCCGAGCGGCTGCAAGGGGCTGTCGTCCCGCCTGTTAACGGGGTGGAGATTCACGTGGACTCCGTGCTGCCTGTGCCACCCATTGAATTTGGAGTCAGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGCCAGGGAGATAGTG
R:
TTTCAGAGAACGCTCGTTGCC
Band lengths:
254-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains