RnoINT0118606 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11237507-11238005:+
Coord C1 exon
chr3:11237507-11237698
Coord A exon
chr3:11237699-11237807
Coord C2 exon
chr3:11237808-11238005
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CCCTCTGCTCTCCCACCAAGGAC
3' ss Score
7.54
Exon sequences
Seq C1 exon
CAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGTGTTGACTTGAGCGCGGAGTCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCTTATGGTACTCTCAAGCCAGATGAGATGAGTGGGCCTGGCCTGGCGGAATCCAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCAGTCTGAGCACAAG
Seq A exon
GTAACCTAGAAGTCCCTTACACGGGGGCCAGGGCCTGGGCAGAAGAGGACTTCTTGGTCTTGTCTTCCTGGAAGCATGTGTGACTCAACCCCTCTGCTCTCCCACCAAG
Seq C2 exon
GACTCAGAACAAGGCTCTGGACAGAGCAAGGAACACAGACCAGGACCCATCGGCAATGAGCGGTCTCTGAAAAACAGAAAGGGCTCGGAAGGGGCCGAGCGGCTACAAGGGGCCGTCGTCCCGCCTGTTAATGGGGTAGAGATTCATGTGGACTCCGTGCTGCCTGTGCCGCCCATCGAGTTTGGAGTCAGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGCCAGGGAGATAGTG
R:
TTTCAGAGACCGCTCATTGCC
Band lengths:
254-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]