GgaALTA0001990-1/3 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6079249-6079858:+
Coord C1 exon
chr8:6079249-6079462
Coord A exon
NA
Coord C2 exon
chr8:6079703-6079858
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCAACTCCGTGTCATTGCAGTGC
3' ss Score
5.94
Exon sequences
Seq C1 exon
GTGGGAAACAAGCCGGTGGAGTGAGTGCTCCAGGACCTGTGGCGAGGGCTACCAGTACCGCACCGTGCGCTGCTGGAAGATGCTGGCTCCAGGCTTCGACAGCTCTGTTTACGATGACCTCTGCGAGTCGGCTGGGCTGGCCAGGCCCATAGAGAGGAAAGCCTGCAAGAACAAGGCCTGCGGACCCCAGTGGGAGCTCTCGGAGTGGTCTGAG
Seq A exon
NA
Seq C2 exon
TGCTCGGCCCGATGTGGCACCCAGGGGACGATGAAGAGGGAGGTGCGCTGCTCGGTGGAGGCAGCCCTCTGCGATGAGTCCCAGAAGCCCAGCAGTGAGAAGGACTGCACAGGACCGCCCTGCGACCGCCGCTGGACCGCCTCAGACTGGGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-22-24,22-23,22-22-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3),PF0009014=TSP_1=PU(14.3=9.7)
A:
NA
C2:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCATAGAGAGGAAAGCC
R:
CTTCTCACTGCTGGGCTTCTG
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]