GgaEX0005367 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6078071-6083566:+
Coord C1 exon
chr8:6078071-6078219
Coord A exon
chr8:6078770-6078899
Coord C2 exon
chr8:6083422-6083566
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACGAGGTCTTGGTTGTCCAGCAG
3' ss Score
1.36
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCATCTTACGTCTTTATTTCCTGCCTCCTCCTCTCTCCGCAGCAACGAGTTTGATGTGAGCCCCGTGGGCCACGATGACATCAGCTTGGCTGACATGTATCGGTGGAAGGTCTCAGCTTATGCCCCCTGCAGCTCCACCTGCACTTCGG
Seq A exon
CAGGTATCAGTGCCTCCTATGCAATGTGTGTACGGTACGACGGAGTGGAAGTGGACGAAGCATACTGCGATGCCCTGACCCGACCAGAACCTACACATGAGTTTTGCACAGGCAGAGACTGCCAGCCTAG
Seq C2 exon
TGCAGCAAGACGTGCGGTGCTGGTGTGCGGCTGCGCGAGGTGAAGTGCTACCAGGGGGAAGCGCTGGCCCAGGGCTGTGACCCCGCTTCCAAACCAGAGGGCAGGCAGACCTGTCAGCTCCAGCCGTGCCCCACGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032_MULTIEX2-1/7=C1-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTGCCTCCTCCTCTCTC
R:
TCTGCCTGCCCTCTGGTTT
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]