GgaEX0005367 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6398104-6399495:+
Coord C1 exon
chr8:6398104-6398252
Coord A exon
chr8:6398806-6398932
Coord C2 exon
chr8:6399282-6399495
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGTCTTGGTTGTCCAGCAGGTA
3' ss Score
4.35
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCATCTTACGTCTTTATTTCCTGCCTCCTCCTCTCTCCGCAGCAACGAGTTTGATGTGAGCCCCGTGGGCCACGATGACATCAGCTTGGCTGACATGTATCGGTGGAAGGTCTCAGCTTATGCCCCCTGCAGCTCCACCTGCACTTCGG
Seq A exon
GTATCAGTGCCTCCTATGCAATGTGTGTACGGTACGACGGAGTGGAAGTGGACGAAGCATACTGCGATGCCCTGACCCGACCAGAACCTACACATGAGTTTTGCACAGGCAGAGACTGCCAGCCTAG
Seq C2 exon
GTGGGAAACAAGCCGGTGGAGTGAGTGCTCCAGGACCTGTGGCGAGGGCTACCAGTACCGCACCGTGCGCTGCTGGAAGATGCTGGCTCCAGGCTTCGACAGCTCTGTTTACGATGACCTCTGCGAGTCGGCTGGGCTGGCCAGGCCCATAGAGAGGAAAGCCTGCAAGAACAAGGCCTGCGGACCCCAGTGGGAGCTCTCGGAGTGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'20-18,'20-17,21-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=83.3),PF0009014=TSP_1=PU(14.3=9.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGATGACATCAGCTTGGCT
R:
GGCTTTCCTCTCTATGGGCCT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]