DreEX0068153 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20911756-20916270:-
Coord C1 exon
chr2:20916167-20916270
Coord A exon
chr2:20915957-20916083
Coord C2 exon
chr2:20911756-20911969
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTCTTGTGTCTGCAGGTA
3' ss Score
11.91
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
TAATGAGTTTGAGGTAGAATCGCTGGATCATGACGTCAGCATGTCGGACATGTATAGATGGAAGGTTTCTGCTTATGCACCTTGCAGCTCAACATGTACAACAG
Seq A exon
GTATAAGCACATCATATGCGTTGTGTGTAAAGTATGATGGGACAGAAGTGGACGAGAGTTACTGTGATGCTTTGACCAGGCCGGAGCCAACACATGAGTTCTGCACAGGGAAAGAGTGCCTGCCCAG
Seq C2 exon
GTGGGAGACGAGTCGCTGGAGTGAGTGTTCTCGAACATGTGGAGAGGGCTTTCAGTTCCGCACGGTGCGCTGCTGGAAGATGATGGCACCAGGGTTCGACAGCTCTGTGTATGATGAGCTCTGTCAGGCCGTGGAGCTGCAGAAACCCATGACGAGGAAAGCCTGCAAGAGCAAGAGCTGCGGCCCACAGTGGGAGATCTCAGACTGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487-'14-20,'14-17,15-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(25.9=38.9)
A:
PF0009014=TSP_1=PD(72.2=90.7)
C2:
PF0009014=TSP_1=WD(100=83.3),PF0009014=TSP_1=PU(14.3=9.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATCATGACGTCAGCAT
R:
CTTGCAGGCTTTCCTCGTCAT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]