HsaEX6063768 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136426320-136433608:+
Coord C1 exon
chr9:136426320-136426417
Coord A exon
chr9:136432058-136432184
Coord C2 exon
chr9:136433395-136433608
Length
127 bp
Sequences
Splice sites
3' ss Seq
CACCCCTGTCCCCAACCCAGGGG
3' ss Score
6.39
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GACCAGGCCCAAGGCGCGCAAGCAAGGCGTGAGTCCCGCGGACATGTACCGGTGGAAGCTCTCGTCCCACGAGCCCTGCAGTGCCACCTGCACCACAG
Seq A exon
GGGTCATGTCTGCGTACGCCATGTGTGTCCGCTATGATGGCGTCGAGGTGGATGACAGCTACTGTGACGCCCTGACCCGTCCCGAGCCTGTCCACGAGTTCTGCGCTGGGAGGGAGTGCCAGCCCAG
Seq C2 exon
GTGGGAGACGAGCAGCTGGAGCGAGTGTTCGCGCACCTGCGGAGAGGGCTACCAGTTCCGCGTCGTGCGCTGCTGGAAGATGCTCTCGCCCGGCTTCGACAGCTCCGTGTACAGCGACCTGTGCGAGGCAGCCGAGGCCGTGCGGCCCGAGGAACGCAAGACCTGCCGGAACCCCGCCTGCGGGCCCCAGTGGGAGATGTCGGAGTGGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGGTGGAAGCTCTCGTC
R:
ACTCCGACATCTCCCACTGG
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)