DreEX0011314 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65217930-65221924:-
Coord C1 exon
chr5:65221824-65221924
Coord A exon
chr5:65219861-65219987
Coord C2 exon
chr5:65217930-65218143
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGTACTCTTTCTCAAACAGGTG
3' ss Score
8.75
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAATAACCATAGGCTCCTTCAGAAGAACAAACCAAGCGCTGCTGACATGTACCGGTGGAAGTTGTCCACACAGGAGCCCTGCAGTATGACATGCTCCATTG
Seq A exon
GTGTGTCAAAATCACTTGCCATGTGTGTGCGGTATGATGGCATCGAGGTGGATGATGTTTACTGTGACGCTTTGACTCGACCTGAGCCGGTTCATGATTTCTGCATTGGTAGAGAATGCCAGCCCAG
Seq C2 exon
ATGGGAGGCGAGCAGCTGGAGTGAGTGCTCTCGGACCTGTGGGGAAGGTTTTCAGTTTCGGCTGGTGCGCTGCTGGAAGATGCTGGCCCCTGGACTCGACAGCTCGGTGTACAGTGACCTCTGTACTGAAGCGCAGCTCGAGCGGCCTCCAGAGCGCCGGGCCTGCAAGAGCCCCACCTGCGGCCCACAGTGGGAGGTAGCCGAGTGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCCTGCAGTATGACAT
R:
CTCAGACCACTCGGCTACCTC
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]