GgaEX7009828 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6984229-6986717:+
Coord C1 exon
chr17:6984229-6984332
Coord A exon
chr17:6985521-6985647
Coord C2 exon
chr17:6986504-6986717
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTATTCTCTTTGAAACTAGGAG
3' ss Score
6.39
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAACAGATTGAAGTTGTTAAGAAAGGGCCAAGGTGTGAGTGCTGCTGACATGTACAGGTGGAAGCTTTCCTCCCATGAACCCTGCAGCTCTACATGCACCACAG
Seq A exon
GAGTGATGTCCACGTATGCTATGTGCGTCCGCTATGATGGGATCGAAGTGGACGATACGTACTGTGATGCCATGACCCGCCCTGAGCCCGTCCATGAGTTCTGTGCTGGGAGAGAGTGCCAGCCAAG
Seq C2 exon
GTGGGAGACGAGCAGCTGGAGCGAGTGCTCCCGTACCTGCGGCGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGATCTCTCCAGGCTTTGACAGCTCCGTCTACAGCGACCTCTGTGAGTCAGCTGACATCACCCGGCCCGATGAACGCAAAGTGTGCAAGAACCCGGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'20-28,'20-26,21-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCTCCCATGAACCCTGC
R:
TCAGACATCTCCCACTGTGGC
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]