RnoEX6016073 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5644672-5649069:+
Coord C1 exon
chr3:5644672-5644769
Coord A exon
chr3:5647725-5647851
Coord C2 exon
chr3:5648856-5649069
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTGCCTGAATCTAGGAG
3' ss Score
8.04
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GACCAGACCCAAGGCACGCAAGCAAGGTGTGAGTCCAGCCGACATGTATCGGTGGAAGCTTTCATCCCAGGAGCCCTGCAGTGCCACATGCACCACAG
Seq A exon
GAGTCATGTCTGCCTATGCCATGTGCGTTCGCTACGATGGCGTTGAAGTGGATGACAGCTACTGCGATGCCCTGACCCGTCCTGAGCCCGTCCATGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
Seq C2 exon
GTGGGAGACCAGCAGCTGGAGTGAGTGCTCACGCACCTGCGGTGAGGGCCATCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTGTCTCCTGGCTTTGACAGCTCCGTGTACAGTGACCTCTGTGAAGCCACAGAGGCTGTGCGGCCGGAGGAACGCAAGACATGCCGCAACCCAGCCTGTGGGCCACAGTGGGAGATGTCTGAGTGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'19-23,'19-21,21-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTTTCATCCCAGGAGCC
R:
TCCGACCACTCAGACATCTCC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]