MmuEX0003899 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27098606-27102982:+
Coord C1 exon
chr2:27098606-27098703
Coord A exon
chr2:27101607-27101733
Coord C2 exon
chr2:27102769-27102982
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTCCCCGAATCTAGGAG
3' ss Score
9.33
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GACCAGACCCAAGGCACGCAAGCAAGGTGTGAGCCCAGCTGACATGTACCGGTGGAAGCTCTCATCCCATGAGCCCTGCAGTGCCACATGCACCACAG
Seq A exon
GAGTCATGTCCACCTATGCCATGTGTGTTCGCTATGATGGTGTTGAAGTGGATGACAGCTACTGCGATGCCCTCACCCGTCCTGAGCCTGTCCACGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
Seq C2 exon
GTGGGAGACCAGCAGCTGGAGTGAGTGCTCACGTACCTGTGGTGAGGGCCATCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTGTCCCCTGGATTTGACAGCTCCGTGTACAGTGACCTCTGTGAAGCCACGGAGGCTGTCCGGCCGGAGGAACGCAAGACATGCCGCAACCCAGCCTGCGGACCACAGTGGGAGATGTCTGAGTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'23-24,'23-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCGGTGGAAGCTCTCAT
R:
AGACATCTCCCACTGTGGTCC
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types