BtaEX6047344 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104495779-104500859:+
Coord C1 exon
chr11:104495779-104495876
Coord A exon
chr11:104500134-104500260
Coord C2 exon
chr11:104500646-104500859
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTTCCTAAACTCAGGGG
3' ss Score
7.2
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GACCAGGCCCAAGTCCCGCAAGCAAGGCGTGAGCCCCGCGGACATGTACCGGTGGAAGCTGTCGTCCCACGAGCCCTGCAGCTCCACCTGCACCACAG
Seq A exon
GGGTCCTGTCGACCTACGCCATGTGCGTCCGCTATGACGGCATCGAGGTGGACGACAGCTACTGCGATGCCCTGACCCGGCCCGAGCCTGTCCAGGAGTTCTGCGCAGGCAGGGAGTGCCAGCCCAG
Seq C2 exon
GTGGGAGACCAGCAGCTGGAGCGAGTGCTCACGCACCTGCGGTGAGGGCTACCAGTTCCGCATCGTGCGCTGCTGGAAGATGCTCTCGCCAGGCTTCGACAGCTCTGTCTACAGCGACCTGTGTGAGGCTGCCGAGGCCGTGCGGCCCGAAGAGCGCAAGACCTGCCGGGGCCCGGCCTGCGGGCCGCAGTGGGAGATGTCCCAGTGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'14-17,'14-15,15-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=WD(100=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTACCGGTGGAAGCTGTC
R:
GACATCTCCCACTGCGGC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]