GgaINT0036827 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6398104-6398932:+
Coord C1 exon
chr8:6398104-6398252
Coord A exon
chr8:6398253-6398805
Coord C2 exon
chr8:6398806-6398932
Length
553 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
AGGTCTTGGTTGTCCAGCAGGTA
3' ss Score
4.35
Exon sequences
Seq C1 exon
CCATCTTACGTCTTTATTTCCTGCCTCCTCCTCTCTCCGCAGCAACGAGTTTGATGTGAGCCCCGTGGGCCACGATGACATCAGCTTGGCTGACATGTATCGGTGGAAGGTCTCAGCTTATGCCCCCTGCAGCTCCACCTGCACTTCGG
Seq A exon
GTAGGTAGAGACCCCGTGCTCAGTTCGAAGACTGCTTTTGTCCTGCTGACTTCTGTAGTTGGAATCCACTTGGCAGCCCCCGAGGAAGGAAAGCACTTTGCCATTTGGTTCCCTCCTTTTTGGGATCGAGAGAGGGCAGATGTGTTTTGGTGGGAAACCAGCACAGTTTCAAATTCCATCAGTCCTAGAGTGGCACCTTGAAGCTGCTGACTTCTGTAACGGTGGTGCAGTCAGACATCTCTGCAGTGTGTAGGGTGAGTTTTAGCATCAGTTTATATCAGAGTTGATGAGAGGTTTGTATGCCAATACTCAGAGCTCAGGGAGAGAAGCAGAGCTATTCAGAGCACGTGGCCGACTTCTGTCTGGAGGCTCTTATCAGTTCAAGCCTTTCCGAGGCAACCGATCACGTCAGGACCTTTTTGGCTACTGGCATTTTTAAATTGCAGGTAGGCTTTCAGAGGCAGTGAGTGCTCTTCAGTGATTTTCTAATAGCTGGGGGAGGCTTCTGGATCCGGTGGAGCCTGACCTAGACGAGGTCTTGGTTGTCCAGCAG
Seq C2 exon
GTATCAGTGCCTCCTATGCAATGTGTGTACGGTACGACGGAGTGGAAGTGGACGAAGCATACTGCGATGCCCTGACCCGACCAGAACCTACACATGAGTTTTGCACAGGCAGAGACTGCCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTCTTTATTTCCTGCCTCCT
R:
TGCCTGTGCAAAACTCATGTG
Band lengths:
254-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]