BtaINT0014341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104495779-104500260:+
Coord C1 exon
chr11:104495779-104495876
Coord A exon
chr11:104495877-104500133
Coord C2 exon
chr11:104500134-104500260
Length
4257 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
CTTCCCTTTCCTAAACTCAGGGG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GACCAGGCCCAAGTCCCGCAAGCAAGGCGTGAGCCCCGCGGACATGTACCGGTGGAAGCTGTCGTCCCACGAGCCCTGCAGCTCCACCTGCACCACAG
Seq A exon
GTACCCGAGGCGGGCCGGGGCGCCCGCAGAGCCCACCTCCACGGCGGGCGCGAGTCTGGGCGTCGGGCCCGTGCACTTGCTTGTAGCCCCGAACTGCCCGCGGTGAGCTCATCTAGCGGTTTCCTGGCCCACGGGATGCGGCGGGACGCGGTGGCAGCCTGGGCGTCCGCGCGCTGGACCACGTAAGGGTCCAGCCGGGTGGGAGTCAGTCAGCACCCCCAGGCTCCCTCGTCCATCTTTCCGCATTCAGTACATTGTTAGGAAAAGCCTCCTCTTGGTTAAAACGTAGGAAACCTCGGGTGGTGAGGAGAAGGGGAAAGTAGGCCCGTGTGGACTATGACAGAGGAAACTTTCCAGATTCTAGGGCCTCGTCTGGGGAGGAAACAGCGGCGGGTATCGGAGGCCCTGGGGTTGCCTGGACAGACACTTGCGGTCAGTAGGTGTCAAGCCAGGGCTTGAGCCGATGTCTGTCTGCTCACTTGGCCGGCCGCCGCTGCACCAAGACGCTGGTTGGCAGCCTGGAGGCTAGGACCCCACCTGCCGCCAGCGTGGTCCCCTCCCTGTAAGGCTGGACGTTAGACCCAGGTGCCGGCCTGCGGCAAGTACAGGGGGACCCCGGGCGCTGCCGTATCTGTACCTGGGACGTGGTGTTTGCGCAAGACTGGGCTTGCTGCTGCTCAAAACGTGCGAGGTCCCTGCCCCTGCCCCTGCACTGCCACCCCAGCTGGCCAGAGCTCTGGGAGCCCCTGCATGCTCTGGCCAGTGTGGCGGAAGAAGCAAGCGGCTGACCGGGCCCTGGGCAGCCGGGGGCCTGTGGAGGTGCAGCATCTCAGGAGATGTGGCCAGGGAAGGAGCTGGGGAGGTGGCTCTGCGGGCCGCTGCGGGGGCCACCGGCTCTCTGTCTCGGGCGGGAAGCCAGGCCCGCTCCCGCTACACCGTCCTTCCTCCCCCAAGCAGGGCAGGTGACGGGCTGAGATTGCCCCTGATATTCTGGAGGGTTCGAGGAGGGCTTTGTCGGGGTGTGGTAAGCGCTTGGGATGAACTATTTGGTCATCCACACCCCACGCTCTTAATTTCTTAGTCTCTGCTCTCTACCTGTAAGATGGGACGTCCACCTATCCAAACGTGGTTATAGGGGCAGATGGGAAAGGAAAAAAAAGCAATCAGGGTCAAAGCTTGACAGCTGGCTGCCATCAGCAGGACCTCTGCTGCTGCTGCGTGCCACCAACGGGGCCTGGAGCAGCCACGGCGCTGGTCCGGGGAATGAAGTCGGGGCTGAGTGCTGGGGCGGGGTGTTGGAGGAGCCCGCTTTGAGAGCCTGCTCCTGAAGGGCAGGGTCCCATTCTGAATCGGGAGCCCCGACGTTATCCGTCGGACCCCACGCGTGCCGAGGGGGCCACAGCACATGCGGTGGGGAGCGTCTGCTGTTCCCCTTGGACATGTCCCTGCCTGGGAGGTGACAAGGCTTGAGATCCCTCCTGGACGAAGCCGCCCTGGTGGCGAGCGGCTGAGCCTGGCCCTGGACAGAAGGTGGTCCCCAGGGAGGTCGCCGCACTGTGTCTCGACGCCCACAGAGTGCTGGGCAGGGGATGGGCTGGCCCGCCCTGGGCGGCCCGAGGTGCGAAGTAGGATGCAAGAAGAAAGGAAGTGAGGAAGACAGGTTCTGGCTCTGCCGAAAGGATGCGCTCTCCTTCAGACGAGCCCGTCTGGGACTGGAGTGAGCGGCCCTGACCCAGAGTGGGTTCCCCGTCGGCGCAGAGGCACCAAATGGGGTCCAAGCGGCACTCCACAGAGGTGGTGAGCCGGGGTCCCTGCAGGATGGCTCACCTCCACTCACCCTGTGGCGGGTTCCTCTTGAAATCCCCCTTTCGGGGCACCGACCCCAGGGGGATCAGGGGAGAGGGTAGTGGTTTACAAACCTTCTGTGGCCTGTGGGGCCTGTGCAAACGTCACTGGTGATCAGCAAGTCTCCTGTGTCCTGAGCCCCGGCCATCGCAGCCATAGCAGCAAGCATTCTTTCTTTTCCTTAAAGATGCTCTTGAGAGGGGGAGAAAGGCAGGTGGATCAGTTTGGACCCCTCGCTTGAGTCACATGGGATGATTCCCGATGGTTCTCGGCATCCCCCTGGCCCAGAGCGAGGGGAGTGCAGTGGACGGGCTCTGAGACCCCCCTCCGGCGGGCAGAACAGGCCCACCCAGTCCGGCGTCGGGGCCTCCTGCTCCTTCCCTTTAGAGGAAGGGCTCGGTAAGAAGGTTTGAGAAGGCCCGCACTCAGGACTGACACCGTGAGGTGGTGTTCAGAAGACCGGAGCTGTGCCTCCCGTCCCGCCTACGGGGTTCCTGGGTGCGGGTGAGTGGCAAGAGGAGGCCTGGAGAGTCTGACCGCCCTCACGTCACCCCCAGCCGGGGACGGCGCTGGGACCAGCAGTCCCGTCCCTCCTGATCAGGACCTGCTGTTTGCCCTGATGACGAGGCGAGAACGAGCAGATGCTTGCTGAGGGGCTGCGAGTCCTCAGACTTGGACCTCTATGGGCCCCAGAAGTGGTGTCTCTGGAACATTCTGAGCAGGCCTGGCCAGGAAGCCAGCCCCCCGCTCAGCGACGGCTAAAGACGACACAGCCCAGCGCTGGCAGAGGGGAAGCCGTGATTGCAACCTGGCTCGTCCCTCACGGAAAAAAGAAAAAATCCCCGTGTGGGCTGCCTCCCAGGCTGTTTTCATTCCATCCAAGGCTGGGGCTTGGAGAGGCAGGAGCTGCCGGCTCTCAGACACGCGCCCCTGGGCAGGGAGCGCGAGTCAGCAGGGGCTCTTGGTTTACAGGGCAGGGCAACCCCCCAAGGGGAGATCATCCGGCAAGGCTGGGTCCCTGCCCCTCGGCACACATGCGCTGGTAATAAAGACAACCCCAGCCCCTGACCCCACCCGTGTTCACGCTCACCTGAGTTGCCCTGGCTCCTTGGCAGGGAGGGAACCACGCACTGTGGAGCGAGCCTGGCCCCTGTGTCAGCCTGGTGCCTGGCATGGGGGTGCGGGGCAGGAAGACCAGAGAAGCAGAAGGTGGAGGTGGCGGTCAAGGAGTGAATAATTTTAGCTGAGGGCTGGCCCTTTACATACGGTCCCCCCACGGGATTTATAGAGTGAAATGAAGTGAAGTGAAAGTCTCTCAGTCATGTCTGACTCTTTGCGACCCCATGGACATCGTCCATGGGATTCTCCAAGCCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGCGGGTCTTCCCAACCCGGGAATTGAACAGGGGTCTCCCACATCGCAGGCGGGTTCTTTACCAACTGAGCTATCAGGGAAGCCCGAGATTTATAGAGTAGCAGGTATTTAATCACAAAAATGATAAAATAAAGTTTGAGAGGGAGCTTGATAAGGACTAGGGCATGCCATGGGAGGGTAGGGAGGACCTGAAGGTCGAATGTAATATCTGAGGAGTCTGGAAGGGGCTGGAATGGTTAGATTACGCATCCATGCATCCATCATCCATCCATACTTCCCCACCTATCCACCAACCTACCCATCCATCCATCCACTCATCTATCCGTCCATCCACCCATCCACCCGTCCACCACCAACGTACCCATCCACTCATCCATCCATCCATCTACCCACACGTAACAGTCATTGAATGAATGAAAATAAGTGGCATCTGGCTGTGTTTGCCTCTGAGCCTCTGTGAGGGCCATTCCGAGTTTACTAAAAGCCCAAATGACTGAGACTTCTTGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAATACAAAAGACCTGTGTTTGATCCTTGGATCAGGAAGATCCCCTGGAGAAGGGACTGGTTACCCACTCCCAAGTATTCTTGCCTGGAGAATCCCATGGGCAGAGGAGCCTGGCGGGCTACAGTCCATGGGGTTGCAGAGTTGGACACACTTGAAGCAACCAACACATCACCTCCTCGTTTCAGTTCAGGGTTTGTGACGCAGCACTGGGTGTCCAGCCTGGGCAGGATGGGCTGTGCAGAGAGGAGCTCAGGCCCTTGGGCCCAGGCGGGGAGGGAGCTCAGATGCACAGACCCGGCCTCGCTGGGACCCGCCCACAGTCTGCTCAGCTTACCTGTCGTTGTTCTTGACTGAAACCAGGAAGCGCAAGAGGCCGGGTGGATCGCCCGCGGCCCCGGGGCCCGCTTGCCGGCCTCCAGAGCTCACAGTGGGCTCAGGCGCCCTTCCCTTTCCTAAACTCAG
Seq C2 exon
GGGTCCTGTCGACCTACGCCATGTGCGTCCGCTATGACGGCATCGAGGTGGACGACAGCTACTGCGATGCCCTGACCCGGCCCGAGCCTGTCCAGGAGTTCTGCGCAGGCAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development