GgaINT0126469 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7657322-7658742:+
Coord C1 exon
chr17:7657322-7657425
Coord A exon
chr17:7657426-7658615
Coord C2 exon
chr17:7658616-7658742
Length
1190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
TGTATTCTCTTTGAAACTAGGAG
3' ss Score
6.39
Exon sequences
Seq C1 exon
AAACAGATTGAAGTTGTTAAGAAAGGGCCAAGGTGTGAGTGCTGCTGACATGTACAGGTGGAAGCTTTCCTCCCATGAACCCTGCAGCTCTACATGCACCACAG
Seq A exon
GTAGTTACGAGAACAGCCCCAGCCGTGTGAGTCGCGCTACGTCTGGTAGGGATGGGAAGGACCTGCTGATGCACAGGGGATTTCTCCATCTTTCGGCCCCACGTAGCATTTACCAGCCCTGCAGGCTCCTGGTGCTCGTGCTGGGTTTTGGCTCCTTCAACCCGAGCGGCTGCAGCAGATTGAAATCCGTGCTGCCAGGCTCCTGCTTGCCTTTCCACTTATTTCCCTTCCCCTTTTGAACACTCAGAGGGTTTTGAAAAGCTCAGCTTCTTTCTGACAGAGCGGAATTGGAAAGATTGTTCCGCTCTGGCAGGAAGCAAAGCGGCATTTGGCTTCTTCATTTGGTTTCCCACTCCTGCTGCCACCGTGCCTGATCTCAGCTGTGACACTCTGAGCCCGGAACAGCGACATGCCTGCCCTCTGCTCCTTAAATTCCCCCTTTTTGTCCCTGCTTTCCTTCCTCCTTGGACCCCAGGTGAAGGGAGGGATCCTGCTCTGTCCCACAGTGCCACACCGCTCACCAATGCGGCCTCAGGAATAATCCTGACACTATGGGGCTTCTGGCATTAGAAGGAAGGGGAGAAGAGGAGACTGCAACCCCAGGGATGCCCAGTTTGCAGTTAGCAGGGGGAGGTTTTACTTAAATTTGCTTTTCTTGTTACCTTTTCCTAATGACGTGTTGCAGAGGAACCATGCAATGTCAACAGCTGTAAATGTCTTTTCAGTTTCATGCAAGTCATATGTTCCTGAGAGCTGCACCTGCAGTTACCTGCAGCCAGAGCAGCCTGCTGGTCCCCAAAAGCTAGAGAAAGACTAGATAGCATTCTGTTCCCCAGGCTAGGCTGCAGCCAGGCTCTCTTTGTGCCAGTGCTGGAGGTTTCCATGTTACCTCCATCCACCAGCCTGGAAGTGGGGAGCAGCCCAGCAGACCCTGAGCATGTTCTATGTGAACACAATGGCTGTGTGTTGTTCCTGGTGCTGAGCACGATGGCTGGACCCACTTCCAGCCTCAGCCCTTGCTTAGGTTGGTTCTGGTGGCCACCATGGCCCTTCTTGCTGGCCAGCATACTCCCTGTGGGCAGAAAGGCTGGCTTGCTGCTTCCCTTCAGGAGGAAGCTTTAGAAAATGCAGCTAAAAACATAACTTTAAAAGGGCTTTTTTTTTTGTATGTGTATTCTCTTTGAAACTAG
Seq C2 exon
GAGTGATGTCCACGTATGCTATGTGCGTCCGCTATGATGGGATCGAAGTGGACGATACGTACTGTGATGCCATGACCCGTCCTGAGCCCGTCCATGAGTTCTGTGCTGGGAGAGAGTGCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATTGAAGTTGTTAAGAAAGGG
R:
CTTGGCTGGCACTCTCTCCC
Band lengths:
230-1420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]