HsaINT1002810 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133561198-133567062:+
Coord C1 exon
chr9:133561198-133561295
Coord A exon
chr9:133561296-133566935
Coord C2 exon
chr9:133566936-133567062
Length
5640 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CACCCCTGTCCCCAACCCAGGGG
3' ss Score
6.39
Exon sequences
Seq C1 exon
GACCAGGCCCAAGGCGCGCAAGCAAGGCGTGAGTCCCGCGGACATGTACCGGTGGAAGCTCTCGTCCCACGAGCCCTGCAGTGCCACCTGCACCACAG
Seq A exon
GTACTGGTCACGGGTGCCAAGGGGCAGCAACTGCCCTGAACCCATTTCCATGGACATGGGCTGGGGCTGTGGGGCCCACCCACTAGCTTGCAGCCCCCAAACTGCCCTCGGGGTGCTTGTCCGTGGCCTCCTGACTTGGGGGCAGTGTGGCGTGATAGGAGTTTGGGTGTCTGGTGAGGCCACCCTCATTCTCACAGTGTGCTAGACCATGGTCAGGTCCAGGCCCCTGGGGGTCATCCGGGCTACCACCCATTGGTGGTAGCCCTTGTCTGTTGCCAGTGATACCATGTTTTGTTAGGGCAAACATCCTTTGGGTTAAAAGTAAGAAATCTTAGGTAGCAGAGATTTTACTTTTGCTTCCAGCAAACATAGGAAGGGAGTCATAGGCCCCTGTGATCTGTGACGAAGGGAAGTAGGCAAATTCTAGGACCTCATCAGCAGGGGAGAAGTTAGGAGGGGAAAAAAGACCCTCCTCGGTGGTGCCTGGACAGACAGATGTGTGTGGTTAGTAAGAGTTGAGCTGGGATTTGAACCCACAGCTGTCTGGTTGCACGGCCACCATCGCCCTGAGACGCTGGCCACAGCCGCTAGAGCTGGAGCTGCCTCTGCTGCCCACTCTAGTACCCTCCCCTGGGGGATGCCGCGAGGTCTGATGTCAAACCCAGGATCAGGATACAGGGCCGTTGATGGGAGAAAATATGGCAGGGAGACCCCAGTGCCGGCTGTGAGGTCACATTTTATCTATTCTTGGGGCTTCATGTTTGGATGTAGAGGATACCCAGCTGGCCCTCAAAAGGTTTGATGCTCCTGGTCCCGCCCCAGTGCCACCCATTTGCCAGGGCATTTGATGCCCTTGCAGTCTCTGGCCAGTGAGGATTCCACACAGCTGGGCAGTCTGAGCTTGGCCGCACCCTCTGCAGCCCTGCTGGCATCTCAGGAGATGGGCCCGAGAGAGGGAGGGGCTGGGGCGGCCCTGCAGGCTCTGCTCACACTGGCCTTGCCTCTCTGGGACTGAAGAAAGGGCTCTGCCTCCTGTTACAAGAGCCCCCAAACAGGGCATAGCCATGGGGCATGCTGTGTTCGCCCCTGCGCCTGGCATCCTGGAGGGAAAAAGCAAGTGCTGTGGGCGGCGTGGCGGGCACCCGGCTCGGCCAGGCTCGCACCGCCGTGGGCGGCGTGGCGGGCACCCGGCTCGGCCAGGCTCGCACCGCCGTGGGCGGCGTGGCGGGCACCCGGCTGGGCCCGGCTCGCACCGCCGTGGGCGGCGTGGCGGGCACCCTGCTGGGCCCGGCTCGCACCGCCGTGGGCGGCGTGGCGGGCACCCGGCTGGGCCCGGTTCGCACCGCCGTGGGCGGCGTGGCGGGCACCGGCTTGGCCAGGCTCGCACCGCCGTGGGCGGCGTGGTGGGCACCCGACTTGGCCAGGCTCGCACCGCCGTGGGCGGCGTGGTGGGCACCGGCTTGGCCAGGCTCGCACCGCTGTGGGCGGCGTGGTGGGCACCGGCTTGGCCAGGCTCGCACCGCTGTGGGCGGCGTGGTGGGCACCCGGCTTGGCCAGGCTCGCACCGCTGTGGGAGGCGTGGTGGGCACCCGGCTTGGCCAGGCTTGCACCGCTGTGGGCGGCGTGGTGGGCACCGGCTTGGCCAGGCTCGCACCGCTGTGGGCGGCGTGGTGGGCACCTGGCTTGGCCAGGCTCGCACCGCTGTGGGCGGCGTGGTGGGCACCGGCTTGGCCAGGCTTGCACCGCCTGGTTGACCACACCATGGGCCCTGGGCAAATTGCCAAAGCCTTCCGAGCCACTGTTTTCCACAGGTGAACTGGGACGCCTGCTTATCTCAAAGGTGGGTTGTGGGGATCCACATGAAACAAGGAATAGCCTCTCATGGTCAGAGGTCAATGGATGCTGCCGTTCTGAGGGTGGCTGCCACCACCTGATGCAGGGTGCGGCTTCCACCATACCCAGGAGCAGCTGGCCTTGGAAGTGAGCCATGTGACCTGCCTTCCGGGCAGACCCCTAGCGGAGCTGAGCATGGTGGTGGGGTGTCAGCAGGGTGTCTGCTTTGCCAAGTCCTTTGCGGACCTGCCCTGAGTTCCTCCACTCTTCCTGGCCAGGGGACTCCAAGCGTGTGGGCGTTGTCAGTAAGTGTCAAGCCTGTGGGCGTTGTCACTAAGTGTCTGCAAACATCTGTGATTCCTCCCAGACACATCGCTGGCTGGAGAGGGGACGTCGCTCGAGACGTCTGCAGGGTGAGGCAGCCTCGCTGGCAAGGGGCCTGATGGGCAGCCCTGCGTGGAAGATGTCCCCAGGGAGGACACAGCACTGTCTCCCAACACCCAGAGAATGGCAGGGAGGGGGCTGGACTGGGTCTGTGCAGCGTGGCCCAAGGTGCAGTGGGGCAAAGGACAACAGGAAATCAGAAAGACAGGTTTTGGCTTTGGAAGAAGGAAACTCTGCTTTACAGGAGGTTGTTCAGAAATGGAAATGAGCCACCCTGAGAGACAGAGAGAGAGAGAGAGAAAGGGGGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAAGGGGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAAGGGAGAGAGAGAGAGAGAGAGAAAGGGGGAGAGAGACAGAGAGAGAGAAAGGGGGAGAGAGACAGAGAGAAAGGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAAAAAGGGGGAGAGAGAGAGAGAGAGAGAGAAAGGGGGAGAGAGACAGAGAGAAAGGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGGGAGAGGGAGAGAGAGGGAGAGAGAGAGAGAAAGAGGGAGAGAGAGAGGGAGAGAGAGAGAAAGAGGGAGAGAGAGAGGGAGAGAGAGGGAGAGAGAGAGAAAGAGAGAGGGAGAGAGAGAAAGAGAGAGAAAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGGGAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGAGGGAGAGAGAGGGAGAGAGGGAGAGAGAGAGAGGGAGAGAGAGAGGGAGACAGAGAGGGAGAGAGAGAGGGAGAGGGAGAGAGAGAGAGACAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGGGAGAGGGAGAGAGAAGGAGAGAGAGAGGGGGAGAGAGAGGGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGAGGGAGAGGGAGAGAGAGAGGGAGAGGGAGAGAGAGAGAAGGAGAGAGAGAGAGGGTGAGAGAGAGAGAGAGAAAGGGAGGGCAGGAGGGAGGGAGAGTTCCCTGTCACTGTGGGAGGTGCTGAATGGCACTGGGCAGAAATAACAGAGTCAGGGTCCACCCTTTGCATAGGTTGTGTCCGTGCGGATGTCCCATGGATGGTCATTGGCCCACCCTCCATCCTGTGCCTCGCAAGAACCCAGGCACAGGGCAGTTCTATCAGTGGGGCAGATCAGCCTGCCCTGAGCTTTGGCCGCGGTGGGGAAGCTTGTTTTTAGATTTTTCTTCGAAGACACTCTTTTGGAGCCATAGCAACAGAGGAGCGTGAGTTTGGCCTCGGCTCAGGTCATAGGTGGAAGTTTCTGCTGCCCTTCGGCGCTCCAGGGCACCGTGGTGAGGACAGTGGATCCTGCGGCCCCCAGGCTTCATCCTCCCCTTTCTTTTGTTTCAAGGAGGGGCTCCGTGGCTCAGGGGGTTTGAAAAGCACCGTTTTCGAGATGGGTGTCATGAAGAGGGTGCCCAGAAAAAACGTCCTGGCATTTGATTCTCACAGGCTCTCTGGAAGGTTCCCATTTCGGGAAGGAGCATGCTGAGGCCTGGAGTCTGGTCACGGTCACGTCACCCCAGGGAGGCACTGAGCTGGGACTTGGATTCCAGTCTCTCTTGACCAAGGCCTGCCGCGTTTCCACTCCGTGACGAGGAGCGAATGAATAACCAGGCACTTGGCGATGGTCTGCAAGTCCCCAGCCCCGCACCTCCCTGGGCCCCAGAGCGGGTGTCTCTGAGGCTTGGAACATTCCAAGCAGACCTGGCCGGGAAGCCAGCCTCCCCCTCAGAGAAGGCTAAAGGCTGCACGGCCCAGCTCTGGCGGGAGAGGAACCGTGATTGCAGCCTGGCTCGTCCTTTACGGAAAAAAGAAAAAATCCCCTTGTCGGCTGCTTCCCAGGCTGTTTCGTTCCATCCAGCGCTGGGGCTTGGAGAGGCAGGAGCCGCTGGCCTGCAGACACACGCCGCCGGGCGGCTGGGTTCTCTGGATATGGGGAAACCGATTTCCTTCTGGGGGAACTGGCAGCTGCAGCCAAGACCGTTCCATGATGCCCGTCATCCCGGAAGGCTGGGTCTGTCTCCCGTGGCCACACACACACACACACACACACACACACACACACAGCCACAGCAGAAGCAGCAAACCCTAACCCCACCCCAAGGCCGTTCCCACTGCTGCCGGCTCTCCCAGAATCATCCTGCTCCTGGGCAGGGAGCTGGGCCTGTGTGGCAGTTCGGTACCAGGCAAGGGTGCAGGGGCGAGGACGAAAGAAGCAGAAGGTGGAGATGTGGTCAAGGAAGTGGCACTGCTAGGTGAGGGCTGCCTGTCACCCACTGTCCCCCAGTGGGATTACAGAGTACGGGGCACCAACAAAGACAGGCACACAGTGATGATTAAAGAAAGTTCAGGCCTGGCGCGGTGGCTCACGCATGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCAATTTCCATAAAAATACAAAAATTAGCCGGGTGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGGGGAGGTTGCAGTGAGCTGAGATTGCACCATTGCACTACAGCCTGGGCCACGGAGTGAGGCTCCATCTCAAAAAAAGAAAGTTCAAGAGGATGCTTGCTAAGGACTGGGGCATGCCACAGAGGGCAGGGCGCGCCCGAACCCCCACCATGACCTCTGAGGAGGCTGACGGGGCTGGAGCCGTCAGATGTCACTCCCGCCTGCCTGTCCACCCAGGGATGGGTGGTTGCTGAACGCCTGGCGATGGGGGACACCTGACTGTGTTTGCCTCTGCACCTCCACGGGGGCCAGCTGGAGCAGACTCAAAGCCCGGACTCCGTGACATGGGAACTGGGAGCCCAGCTGGGTTGGGTGGGGCGGGGTGGGGGTGCAAAGAGAAGAGCTCAGACCCGCACAGCTCAGACCCACAGTGCTGCCCTCATGCCACAGTTGCACAAGCTGTGACTGATCCCCAAGCCAGAAAGCTGAGCTGAGAGGTCAGGTGACTTGCCCCAAGTCCTGAGGCCTGTCTGCTGGGCTCCAAGGTGCCGGCATGGCTCACAGACCCACCCCTGTCCCCAACCCAG
Seq C2 exon
GGGTCATGTCTGCGTACGCCATGTGTGTCCGCTATGATGGCGTCGAGGTGGATGACAGCTACTGTGACGCCCTGACCCGTCCCGAGCCTGTCCACGAGTTCTGCGCTGGGAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains