RnoINT0013623 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5644672-5647851:+
Coord C1 exon
chr3:5644672-5644769
Coord A exon
chr3:5644770-5647724
Coord C2 exon
chr3:5647725-5647851
Length
2955 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTCCCTTTGCCTGAATCTAGGAG
3' ss Score
8.04
Exon sequences
Seq C1 exon
GACCAGACCCAAGGCACGCAAGCAAGGTGTGAGTCCAGCCGACATGTATCGGTGGAAGCTTTCATCCCAGGAGCCCTGCAGTGCCACATGCACCACAG
Seq A exon
GTACTGAGGCCGGGACCACTGGGTCACCTCCTCCGAGCCTGCCTGCCTTTACGGTGACTGGGGCTTAACTGGAGACTCTTGCATTTCATTCATGTCCAGTCCCAAGTCACCCGCAAGGAGCTTGCCTGGCTTCTTGATCTGGGAGGTGGGATGGAATGGCAGAAAGGTCACAAAGGCATCCCTGTTCCCATGACATGCTGGGTGACAGTCAGGTCCAGGCCCCACTGGTTAGCCCTAATTATCCTCTAACATCTCAGGAGAGAGGCTTTTCAGAGGAAACATGGAGATCTTCAGTTCTGAGGTTCTGCTCATACTAGCACTGACCAAAACCACACAATACTGCCCTCTTCATAACAAACTGGAAGCAAACAAATACCTTTGGGTTGGAGAACATTAGAGCCACGCTGCCTACTTCCCAGTCTCTTGGGAAATGGCTACCAATTTCTGCCCATGACTGGAATGCACCATGAAAAAGGTTCTTGTGGGATAAATGGGAAGGCCCCACCTGCCTGGTTCTAATTCAGCCAGTGAACACCATTGCTGTCCCCATGCTGTGGGATTCTGAGGTAAGACTGAAGCTGTTCCTAGCCCAGGGGCAGCCAGTCCACTGGCTCCAGCAGACAGATGAGCCCTGAAACTTGCTTTTCATAGGGTTGGGTTGTTAGGACCAAACTTTATAGCAGATGGGTGGCCTGTGCGTCTTGAAACCTGTTGAAGCTGGGTGTGGACATGCCAGGGATCCTTCTATCCATCCTGGCTGCGGGACCTACCATGTGCTGTGACCACGGAAACTTTCTGGAGGCTGGGGAGGTGACATCACTTGAGATGTCTCTGGGTTGAGTCAGCCTTGGTGGCAAGGTGTTTGGTGAACGAGCCCTGGTAGGTGACGTCTCCTGGGAGAATGTGACACCATCGTCTTTCAGCACTTAGACAGTGACCAGGACTAGGAGTGGGGATGTTCTATGTGACCCACAGTGCAGAGCAGGACACAGGAAGGAAGAAAATAGAACAGGTCTGATGCTGGGGAATGGATGAGCTTGGCTTTAGACACAGATGTCAGAAGTAGAGAGGCTCCTGTGACCTTAAGGGGCACTGACCCATCTGAGTGGCACTGGCAGATAGGACAGAGGAGGGTCACACTGCAGACAGTTCACTACTTCAGCCCCTTCTGCCCTAACCTCACTAGTTGTCTAGAAGGCCCTGCTGTTCCCGGCCAGGGCTTACATTTGATGTGCAAAACTGCAGCCATGCTGAAGAGGCAAGGCCAGGGTGTGGGTTTTGCCAGGTGTGGCTGCAAACAATGTCTGCAGATGTTCTGCAGAGAGTCATGAGTACACCTGCTTCTCTTCCCCTCCCCTCACGCTGCGATCTGCTTTTGGGGGTGTGCAGGGCTGTAGGGCCTTTCTTCTCTGCACCCTGAACCCTAAGCCATGGTGAGGATCTTAGGTTTGTTCTTTTGGAACAGCATTGTGCTCACGTGGTCTTGGACTCTGCTTGGGACTCAGGGCATGGCTTCTAGGCTGTCCTTCAGTCCCCCAGAGCACAGAATAGCTTCCCAGGAGCTAAGGGACCTGGGAGGCTTGTTACTGAGAATGGTCTTGTTTATTTCACATCTCAGGGCTCAAAGCACACTTCAGCTCAAGGCAAGGACTCTGTGGTCAAGGAATTTTGAGAAGCTTTCCACTCAAGACAGGTGTAAGGAAAAGGTGCCCAGAAATGTGACATTTTGTTCTTGTAGCCTTTCTGGAAGTTTCCCATTCTGGAAATGAGCAATCTGGGGCTGCGACAAATCTGGTGGCTCTACTAGGTGGGACTTGGATTTTCTTCTGTGTGTTTCCATTCCACGGTGACAAACCAAAGCACAACCAGGTACTTGGGGTAGCTGCACAAGTCCCCAACCCTGTCTGTATATCCCTGGGTCCCAGAGCTAGTGTCTGAGGCCCGAAATGTTAAGCAAACCTGGCCAGGAAGCTCCTGGCCTCCTCCAGCAGGCTGATGGCTGCCCAACCCATGCTGGCAGGGGAAGAACCAGTAATTGCAGACTGGTTTGGCCCTCATGGAAAAAAAAAAAAAAACAAAACACATGTATGGGTTCTCAAACTCCATGGTTCTGTCCAGGGAGTTTGGAGCAGCAGAGGGTGCTGAGGCCCAGACACCCCTGGACAGGGAGAACCACCGGAAATCCCAGGAGTTTCTTTCACCAACAACACTTTCCTCAGCAGAGCAAAATCCTGGCTCACCTTGCTCCAGAGCAGGGGAAGCTCACCCTTTAGAGAGCCTATGTGCGGGGTTGGGGACTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGGAAAAAAAAAAAAAAAAAAAAAAAGAGAGCCTATGTGCAGGCTTTCTCTGACGTGTAGGAAGTAGGAGGAAGGAGAGGAGGTGTGGCCAGGTCTTGTGTATGTGTGAGACCCTTCATATCCCCTTGGTATTTTAGAATTCAGGAATCCCAGAAAAAGCCACACAAATAGTTAAAGGCATTTGGAGGTGCTGGATGGGAGACCCTCAGTAAGAGCTGAGGCCCCTAATCCGATGTCTGGGGCAAGGCTGTCTTGCTGCCATGGTTCGGTTTTTCAACCTGCTCGCCTGCTCATCTGTCATACATGGGCTTTGTCAGACAAATGCATTTTACGGTACCTGGCTGTAACCGACTCTGCCTCTGTAAGATCCATCTAGGTTTGTGGCAGGTGAGCTAGAAGCCTGGACTGGGCTGGAGGGGCTGGGCAGAGAAAGAGGTCCGATCCGCAGACTCTGGCCCACAGAGGTTTCCTGAAGCAACTCTCAGAGTGATCACATGGTCCATCCAAGACCACAAGGCTAACCTGTGTCTGCCCGTGTCCAAGGTACTCCCTGTTAAGCACACAGTTTACAGACCCTTCCCTTTGCCTGAATCTAG
Seq C2 exon
GAGTCATGTCTGCCTATGCCATGTGCGTTCGCTACGATGGCGTTGAAGTGGATGACAGCTACTGCGATGCCCTGACCCGTCCTGAGCCCGTCCATGAATTCTGCGCTGGGAGGGAGTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]