GgaINT0126469 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6984229-6985647:+
Coord C1 exon
chr17:6984229-6984332
Coord A exon
chr17:6984333-6985520
Coord C2 exon
chr17:6985521-6985647
Length
1188 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
TGTATTCTCTTTGAAACTAGGAG
3' ss Score
6.39
Exon sequences
Seq C1 exon
AAACAGATTGAAGTTGTTAAGAAAGGGCCAAGGTGTGAGTGCTGCTGACATGTACAGGTGGAAGCTTTCCTCCCATGAACCCTGCAGCTCTACATGCACCACAG
Seq A exon
GTAGTTACGAGAACAGCCCCAGCCGTGTGAGTCGCGCTACGTCTGGTAGGGATGGGAAGGACCTGCTGATGCACAGGGGATTTCTCCATCTTTCGGCCCCACGTAGCATTTACCAGCCCTGCAGGCTCCTGGTGCTCATGCTGGGTTTTGGCTCCTTCAACCCGAGCGGCTGCAGCAGATTGAAATCCGTGCTGCCAGGCTCCTGCTTGCCTTTCCACTTATTTCCCTTCCCCTTTTGAACACTCAGAGGGTTTTGAAAAGCTCAGCTTCTTTCTGACAGAGCGGAATTGGAAAGATTGTTCCGCTCTGGCAGGAAGCAAAGCGGCAGTTGGCTTCTTCATTTGGTTTCCCACTCCTGCTGCCACCGTGCCTGATCTCAGCTGTGACACTCTGAGCCCGGAACAGCGACATGCCTGCCCTCTGCTCCTTAAATTCCCCCTTTTTGTCCCTGCTTTCCTTCCTCCTTGGACCCCAGGTGAAGGGAGGGATCCTGCTCTGTCCCACAGTGCCACACCGCTCACCAATGCGGCCTCAGGAATAATCCTGACACTATGGGGCTTCTGGCATTAGAAGGAAGGGGAGAAGAGGAGACTGCAACCCCAGGGATGCCCAGTTTGCAGTTAGCAGGGGGAGGTTTTACTTAAATTTGCTTTTCTTGTTACCTTTTCCTAATGATGTGTTGCAGAGGAACCATGCAATGTCAACAGCTGTAAATGTCTTTTCAGTTTCATGCAAGTCATATGTTCCTGAGAGCTGCATCTGCAGTTACCTGCAGCCAGAGCAGCCTGCTGGTCCCCAAAAGCTAGAGAAAGACTAGATAGCATTCTGTCCCCCAGGCTAGGCTGCAGCCAGGCTCTCTTTGTGCCAGTGCTGGAGGTTTCCATGTTACCTCCATCCACCAGCCTGGAAGTGGGGAGCAGCCCAGCAGACCCTGAGCATGTTCTATGTGAACACAATGGCTGTGTGTTGTTCCTGGTGCTGAGCACGATGGCTGGACCCACTTCCAGCCTCAGCCCTTGCTTAGGTTGGTTCTGGTGGCCACCATGGCCCTTCTTGCTGGCCAGCATACTCCCTGTGGGCAGAAAGGCTGGCTTGCTGCTTCCCTTCAGGAGGAAGCTTTAGAAAATGCAGCTAAAAACATAACTTTAAAAGGGCTTTTTTTTGTATGTGTATTCTCTTTGAAACTAG
Seq C2 exon
GAGTGATGTCCACGTATGCTATGTGCGTCCGCTATGATGGGATCGAAGTGGACGATACGTACTGTGATGCCATGACCCGCCCTGAGCCCGTCCATGAGTTCTGTGCTGGGAGAGAGTGCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGATTGAAGTTGTTAAGAAAGGG
R:
CTTGGCTGGCACTCTCTCCC
Band lengths:
230-1418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]