GgaALTA0001989-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr8:6398104-6398932:+
Coord C1 exon
chr8:6398104-6398252
Coord A exon
chr8:6398803-6398805
Coord C2 exon
chr8:6398806-6398932
Length
3 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
ACGAGGTCTTGGTTGTCCAGCAG
3' ss Score
1.36
Exon sequences
Seq C1 exon
CCATCTTACGTCTTTATTTCCTGCCTCCTCCTCTCTCCGCAGCAACGAGTTTGATGTGAGCCCCGTGGGCCACGATGACATCAGCTTGGCTGACATGTATCGGTGGAAGGTCTCAGCTTATGCCCCCTGCAGCTCCACCTGCACTTCGG
Seq A exon
CAG
Seq C2 exon
GTATCAGTGCCTCCTATGCAATGTGTGTACGGTACGACGGAGTGGAAGTGGACGAAGCATACTGCGATGCCCTGACCCGACCAGAACCTACACATGAGTTTTGCACAGGCAGAGACTGCCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-20-17,20-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGTGGAAGGTCTCAGCTT
R:
TCCGTCGTACCGTACACACAT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]