GgaINT0036831 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6080798-6082794:+
Coord C1 exon
chr8:6080798-6080968
Coord A exon
chr8:6080969-6082617
Coord C2 exon
chr8:6082618-6082794
Length
1649 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTTTATGTTCTCTTTCCCAGTGT
3' ss Score
9.29
Exon sequences
Seq C1 exon
TGCTCAGGTTCGTGTGGTGAGGGACGCATAAGCCGTTTCGTCGCCTGTCGCAACCTGGAGGGCAAGGTGATCTCTGACACGCAGTGTGACCCAGCTGCCAAGCCCCTGGCCGTCCATCCGTGTGGAGACAAGGACTGCCCTGCACACTGGGTGGAGCAGGAGTGGGACCAG
Seq A exon
GTAAAGCCAAGCCCAGCCCCCCATCCTCAGCCCTCCTTCCCACCACATCCCACGGGGGATGGTGGGCACTTGGCTCCCTTGGTGGAGCAAAGTTGGACAGTGTGACCACCAGCTGCAGAGCTGTACCCTCATCGTAGCTCCTTCCAAGAAGAGGGAAGAGGAAAATACCCCAGCTTGTCCCCACCATACCCCGGTCTGTGACACTTGTGGCCCTCTGACAGAGGTCTCTGGGAAGGCAGCAGTGTCCTAAGGAAGTTCTCCTCCTCTCCCACTTCTGGCTCCCAGCTGGCAGTTGCAGGCACCTCAGCAGAGTCCCATCCAGAATCTGCGCTCACACCCCCAAGATTTTGGTCTCCCTGCTAAAGAGAAAGCCCTAGAAAAACCAACTGTGTCGCCAGTTAACAGGAGCCAGAGGTAAACCCAGACCACAGCCCAGGTCCCTGCCCTGGCAGTCACCTGCAGCCCAAGAGCATTTACTTGCCCCAAATGCAAGGAACGTAGCCCAGGGGCCCTCTTCTACTAAGCCAGCAATTGCTGCCAGCCTGCTTGTCCTCTGTTGCTGGAGGTGCTTTTATGAGCTTCCATTACAAGCTGGTCCAAATCCCAGAGCACCCAGGGAGAGTATTGTGACAAACATGTGGGGTTTGGGCTTTGCCTTGTGAAGTCCTGAGAGAAACAGGCATTCACAGAGCACGAAGGAGGAGGGTTTCTAAGGAATCCTTTCTCTAGCCTTCCCAGCTGCTGACTGCGTTCAGTTGAGAGTCCCCCCAGGACAAGAAACGAGCAGAAATCACTTACAACTGGGGACCCACAGCAGTCCTGTAGCCCTTTCCTGCTCTGTCCTGTGGTGTGGGTCACACCGAATGCTGCAGTGCTGTTTGTGAGCTGTGCCTGAGTGATTACGCTCACCTGAAGGGCCAGCTGGGCTCCCCTCTTTTGCCTGTGCCAGCTTCTTTGCTGTGCTCTCTCAGCTGACCAGCTGCGGGTGAGCTGTTTGCAGGATGACTCAGGAGGGATGTGAGCCAGCTGTGCTGGCCCTGGCACTGTGAAGATGGGCACCAAGCAGTGAAATCTTGTGCTGATAAGTGCTGCCCAGGACACCATGGAACACAGCTAGAATCAGATTCTGCCTCCCACTGCCCGCTTCTCTCGGCGTTGTCCTGAGAGGTCGATCCCTCCCATCTCTGCCTGCATAGCTTTGGGCTGAGCTCGGGTACTTGTCTGTGAGCATCTCCTGCAGTGTACCAGCTTGGTCCCCTGGAGCCCTCACAGAGCTTGTCAGTGCTCCAAGATGTAGATTACTGCACAAACACGCTACGCGGTCTTTTAGGACGTAGAGATACATAAAATAAGACAGAAGCAGCCTCTTACAGTCTTACCTTGGCTGCTCCAGGTCCCCTGTGGGAGCTGCTCTCAGGCCAGCCAGGCTCGATTCAGCATCCTCCGTGCTGGTTGAACACATAACCATCTCCTGTCCCTGCTGCAGAGGAATTCAGCTCCCTTGCAGGCACCCCTTGCTCCCGTGACCTGGGCAGCACTACCTCCATCAGCCTGGTGTTAGCACATACATTCAGCCCCTGGCTTCTGAGCGGGATGCCACTTCACCTGAAGCTCTGCAGCAGAGCAGCAGTTTATGTTCTCTTTCCCAG
Seq C2 exon
TGTGATGCCAGCTGTGGACGAGGGACGAAGACCCGGGTTGTCCTGTGTGCAGGGCTGGAGAACGGGGTGTACAGGGAGTACCCTGAGAAGCGCTGCGAGGCTGGGCAGAAGCCTGAGGAGCAAGCTGCCTGCTTCATGAGGCCATGCTCAACCTGGTTCACTACCTCCTGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
A:
NA
C2:
PF0009014=TSP_1=PD(84.2=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGTTCGTGTGGTGAG
R:
GTAGTGAACCAGGTTGAGCATG
Band lengths:
334-1983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]